PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g031810.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 240aa    MW: 27325.7 Da    PI: 9.2739
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g031810.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM107.41.8e-3321412128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......s 80 
                       G++F+P+d+e++  +L++kv+++k      ++  e   +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      +
  Csa03g031810.2   2 ITGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeeghE 92 
                     68***********9.89*****999956644322..22222333336**********.566677888******************7333454447 PP

             NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      +W++tgk+++v+s ++ + g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  Csa03g031810.2  93 TRWHKTGKTRPVFS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 141
                     88************.8889**********6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100531.571160IPR003441NAC domain
PfamPF023651.8E-143141IPR003441NAC domain
SuperFamilySSF1019414.97E-343160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MITGVKFDPS DKEILMHLEA KVSSDKRKLH PLIDEFIPTL EGENGICYTH PEKLPGVSKD  60
GQVRHFFHRP SKAYTTGTRK RRKVSTDEEG HETRWHKTGK TRPVFSQSGE AGFKKILVLY  120
TNYGRQKKPE KTNWVMHQYH LGNSEDEKDG EPVLSKVFYQ TQPRQCGNST EPKPKNLVNL  180
NRFSYENTQT GFGYEHGGKS EEASQVIREL VVHEGDGSCS FLRFTCDASK GKESFMKNQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g031810.2
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0864760.0AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019099249.11e-177PREDICTED: NAC domain-containing protein 10
SwissprotF4HY611e-168NAC10_ARATH; NAC domain-containing protein 10
TrEMBLR0GQV51e-169R0GQV5_9BRAS; Uncharacterized protein
STRINGXP_010501633.11e-178(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28470.11e-170NAC domain containing protein 10