PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g033040.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 300aa MW: 34139.4 Da PI: 7.9978

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g033040.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.3	3.8e-34	153	210	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ Csa03g033040.1 153 EDGYRWRKYGQKAVKNSAFPRSYYRCTTQKCNVKKRVERSFHDPSIVITTYEGKHNHP 210 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-35	137	212	IPR003657	WRKY domain
SuperFamily	SSF118290	7.72E-30	144	212	IPR003657	WRKY domain
PROSITE profile	PS50811	31.927	147	212	IPR003657	WRKY domain
SMART	SM00774	5.9E-40	152	211	IPR003657	WRKY domain
Pfam	PF03106	2.1E-26	153	210	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MDGHVEHKNT SLEEVSFMSL TDCLQSSLLM DYNLLEKVFK FPPYSSPFQP VTPSNMGHTV 60 NNPHLNLSSN SPMVSSSSNE ADPKENPNDN KSDRMEEDIE GDQHGVGECS KLVLICFWWM 120 NMVRKKEGKK KGEKKEREAR VAFMTKSEID HLEDGYRWRK YGQKAVKNSA FPRSYYRCTT 180 QKCNVKKRVE RSFHDPSIVI TTYEGKHNHP IPSTLRGTVT AEHLLGHRGG GSSFLHSSPR 240 HHQDLLMVKH PPANYQPVVS MSYEQGHVIN SYNNNNYQPG VDYGLLQDIV PSMFLKHES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	5e-28	142	213	7	78	Probable WRKY transcription factor 4
2lex_A	5e-28	142	213	7	78	Probable WRKY transcription factor 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g033040.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF421158	0.0	AF421158.1 Arabidopsis thaliana WRKY transcription factor 71 (WRKY71) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499502.1	0.0	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q93WV4	1e-142	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	R0I3Y3	1e-147	R0I3Y3_9BRAS; Uncharacterized protein
STRING	XP_010499502.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13911	18	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-135	WRKY DNA-binding protein 71

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]