PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g033040.2

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 289aa MW: 32658.5 Da PI: 7.7808

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g033040.2	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	108.4	3.6e-34	142	199	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s fprsYYrCt+++C+vkk+vers +dp++v++tYeg+Hnh+ Csa03g033040.2 142 EDGYRWRKYGQKAVKNSAFPRSYYRCTTQKCNVKKRVERSFHDPSIVITTYEGKHNHP 199 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.2E-35	126	201	IPR003657	WRKY domain
SuperFamily	SSF118290	7.19E-30	133	201	IPR003657	WRKY domain
PROSITE profile	PS50811	31.927	136	201	IPR003657	WRKY domain
SMART	SM00774	5.9E-40	141	200	IPR003657	WRKY domain
Pfam	PF03106	2.0E-26	142	199	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MDGHVEHKNT SLEEVSFMSL TDCLQSSLLM DYNLLEKVFK FPPYSSPFQP VTPSNMGHTV 60 NNPHLNLSSN SPMVSSSSNE ADPKENPNDN KSDRMEEDIE GDQHGVGECS KLVKKEGKKK 120 GEKKEREARV AFMTKSEIDH LEDGYRWRKY GQKAVKNSAF PRSYYRCTTQ KCNVKKRVER 180 SFHDPSIVIT TYEGKHNHPI PSTLRGTVTA EHLLGHRGGG SSFLHSSPRH HQDLLMVKHP 240 PANYQPVVSM SYEQGHVINS YNNNNYQPGV DYGLLQDIVP SMFLKHES*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-28	131	202	7	78	Probable WRKY transcription factor 4
2lex_A	3e-28	131	202	7	78	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g033040.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF421158	0.0	AF421158.1 Arabidopsis thaliana WRKY transcription factor 71 (WRKY71) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499502.1	0.0	PREDICTED: probable WRKY transcription factor 71
Swissprot	Q93WV4	1e-146	WRK71_ARATH; WRKY transcription factor 71
TrEMBL	R0I3Y3	1e-151	R0I3Y3_9BRAS; Uncharacterized protein
STRING	XP_010499502.1	0.0	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	1e-140	WRKY DNA-binding protein 71

Publications ? help Back to Top
Guo D, et al. The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis. Plant Cell, 2015. 27(11): p. 3112-27 [PMID:26578700] Yu Y, et al. WRKY71 accelerates flowering via the direct activation of FLOWERING LOCUS T and LEAFY in Arabidopsis thaliana. Plant J., 2016. 85(1): p. 96-106 [PMID:26643131] Guo D,Qin G EXB1/WRKY71 transcription factor regulates both shoot branching and responses to abiotic stresses. Plant Signal Behav, 2016. 11(3): p. e1150404 [PMID:26914912] Yu Y, et al. WRKY71 Acts Antagonistically Against Salt-Delayed Flowering in Arabidopsis thaliana. Plant Cell Physiol., 2018. 59(2): p. 414-422 [PMID:29272465]