PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g033900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 435aa    MW: 46980.8 Da    PI: 5.3984
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g033900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.54.3e-31216274259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs+fpr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Csa03g033900.1 216 SDLWAWRKYGQKPIKGSPFPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 274
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381531.5E-2461434No hitNo description
Gene3DG3DSA:2.20.25.807.6E-31209276IPR003657WRKY domain
PROSITE profilePS5081132.879210276IPR003657WRKY domain
SuperFamilySSF1182903.53E-26213276IPR003657WRKY domain
SMARTSM007746.3E-38215275IPR003657WRKY domain
PfamPF031067.6E-26217274IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 435 aa     Download sequence    Send to blast
MCSVSELLDM DSFQGDLTDV VRGIGGHVLS PETPPQNIWP LPLTHPLPSS SSDLHINPFG  60
DPFVSMNDPL LQELNAVTNS SYFSTVGDSN NTNNNGFLVP KVFEEDHIKS QCSIFPRIRI  120
SHSNIIHDSS PCNSPAMSAH AVAAAAAASP RGIINVDTNS PRNCLLVDGN TFSSQIQISS  180
PRNLGLKRRK SQAKKVVCIP APAAMNSRSS GEVVPSDLWA WRKYGQKPIK GSPFPRGYYR  240
CSSSKGCSAR KQVERSRTDP NMLVITYTSE HNHPWPIQRN ALAGSTRSSS SSANPNSSKS  300
PTANANAAAS SIGSQTTYLP SSATPPPPPP PPPVSVSSVK DERGDDMELE NVEDDDDVAP  360
YRPELHDHQN QPDDFFADLE ELEGDSLSML LSQGCAGDGK DKKMASDGIS DFFGWSRDNS  420
NNNNNNYDQE SRSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25190276279Disease resistance protein RRS1
5w3x_D2e-25190276279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g033900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2283430.0AK228343.1 Arabidopsis thaliana mRNA for putative DNA-binding protein, complete cds, clone: RAFL14-76-G23.
GenBankBT0064680.0BT006468.1 Arabidopsis thaliana At1g30650 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499609.10.0PREDICTED: probable WRKY transcription factor 14
SwissprotQ9SA800.0WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A384KXJ40.0A0A384KXJ4_ARATH; WRKY14
TrEMBLQ0WRG60.0Q0WRG6_ARATH; Putative DNA-binding protein
STRINGXP_010499609.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.10.0WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]