PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g033920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 254aa    MW: 29294.4 Da    PI: 7.011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g033920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.5e-07135179655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++ r+RR+ri ++ +eL +l+P +     +K + ae+   A +Y+k Lq
  Csa03g033920.1 135 SIAARKRRRRITEKTHELGKLIPGS-----QKHNTAEMFHAAAKYVKFLQ 179
                     6788*******************98.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.392129178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10130190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-10132194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-8135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-5135179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MDTFFFQAQP QHQLHQPLHL EEALSPSLCE FSHFYEPFLP PQDIFLPSPK TEVFNESQDL  60
DAFFPTPKHQ KLINSSFHFN TNEPFFPSPN PNLLDSYVTE TSNFSEFLVP DFSPAFKVGW  120
SDKCDTKKPE LSAQSIAARK RRRRITEKTH ELGKLIPGSQ KHNTAEMFHA AAKYVKFLQA  180
QIEILRLKQT NMQSRESSKV GREMQFLLAS QEIQEKLSTE EVCVVPREMV QVLKAEECIL  240
RNPRISRDLN KLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138142RKRRR
2139144KRRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g033920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4885871e-180AF488587.1 Arabidopsis thaliana clone bHLH052 putative bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478497.11e-170PREDICTED: transcription factor bHLH52-like
SwissprotQ9SA821e-133BH052_ARATH; Transcription factor bHLH52
TrEMBLR0INR81e-158R0INR8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010501667.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45472552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.11e-125bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]