PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g036240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 238aa    MW: 26958.2 Da    PI: 9.4899
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g036240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF564.9e-18956450
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE.EEEE CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl.yeys 50
                    ++ s++++ +  R ++++KKA+ELS+LCd+ev+vi++  +g+l ++++
  Csa03g036240.1  9 SSVSKKTTNLPMREHTMFKKASELSILCDVEVCVIYYNRDGELvRTWP 56
                    67788999999******************************9746887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.7E-7157IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.933851IPR002100Transcription factor, MADS-box
CDDcd002661.60E-191283No hitNo description
SuperFamilySSF554551.57E-141390IPR002100Transcription factor, MADS-box
PfamPF003191.2E-121452IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MFKKQPSLSS VSKKTTNLPM REHTMFKKAS ELSILCDVEV CVIYYNRDGE LVRTWPEDQS  60
KVRDMAERFS KLNDRERRKK STNLSLFLNK KTGLKDKKTS FDITDNRFSE KVLEMEASLE  120
SSLRVLQDKL LRLQNQAEPN QKNPVVSSGG FFTPDPSLMS GTEQDLSTPS LTQQHQSKFS  180
VFLYNHDNGS FCQLPDSSVS TFDPSTSSAS LGTTLXRNPI RRTLWCLPAA SSHQIHH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g036240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499740.11e-154PREDICTED: agamous-like MADS-box protein AGL93
SwissprotQ7X9H91e-72AGL93_ARATH; Agamous-like MADS-box protein AGL93
TrEMBLR0H1194e-93R0H119_9BRAS; Uncharacterized protein
STRINGXP_010499740.11e-154(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM5753944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27580.11e-71AGAMOUS-like 89
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]