PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g036590.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 395aa MW: 44430.2 Da PI: 8.2469

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g036590.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4e-32	220	273	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Csa03g036590.1 220 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 273 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.97E-15	217	273	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-28	218	273	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.6E-23	220	273	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-7	221	272	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSTLVSNS 60 SSKPTNHPFQ DLSLSNNSHQ QQQKQHQHHQ PHLVPNCNGS NILTSFQFPT QQQQQHLQGF 120 LAHDLNTHLR PIRGIPLYHN PPPHHHHRPP PPCFPFDPSS LIPSSSPSPP SLTGNNNTSS 180 VSNSGLITNP NYHNHHHHHQ TLNRARFMPR FPAKRSMRAP RMRWTTTLHA RFVHAVELLG 240 GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTDKA AASSGQSDVY ENGSSGDNNS 300 DDWMFDMNRK SRDSEEVTNP LEKGNGLWTN SSGEARLHGK LIDNVAEIML PSEKEIDGKC 360 SSYERISSEE MSSSSISGTS PFKPNLEFTL GRSH*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MELFPAQPDL SLQISPPNSK PSSTWQRRRS TTDQEDHEEL DLGFWRRALD SRTSTLVSNS  60
SSKPTNHPFQ DLSLSNNSHQ QQQKQHQHHQ PHLVPNCNGS NILTSFQFPT QQQQQHLQGF  120
LAHDLNTHLR PIRGIPLYHN PPPHHHHRPP PPCFPFDPSS LIPSSSPSPP SLTGNNNTSS  180
VSNSGLITNP NYHNHHHHHQ TLNRARFMPR FPAKRSMRAP RMRWTTTLHA RFVHAVELLG  240
GHERATPKSV LELMDVKDLT LAHVKSHLQM YRTVKTTDKA AASSGQSDVY ENGSSGDNNS  300
DDWMFDMNRK SRDSEEVTNP LEKGNGLWTN SSGEARLHGK LIDNVAEIML PSEKEIDGKC  360
SSYERISSEE MSSSSISGTS PFKPNLEFTL GRSH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-16	221	275	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-16	221	275	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-16	221	275	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-16	221	275	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	221	275	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g036590.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY048689	0.0	AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBank	BT029211	0.0	BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010499772.1	0.0	PREDICTED: probable transcription factor KAN2
Swissprot	Q9C616	0.0	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A0D2ZR21	0.0	A0A0D2ZR21_BRAOL; Uncharacterized protein
STRING	XP_010499772.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5387	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	1e-177	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]