PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g037960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 184aa    MW: 20497.8 Da    PI: 5.566
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g037960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.24.8e-192169355
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    y+GVr++k +g+Wv+eIr+p   gk++r++lg++ tae+Aa+a++ a ++l+g
  Csa03g037960.1 21 YRGVRQRK-WGKWVSEIREP---GKKTRIWLGSYETAEMAAAAYDSASLYLRG 69
                    9******9.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.0762077IPR001471AP2/ERF domain
SMARTSM003801.1E-322083IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-302078IPR001471AP2/ERF domain
PfamPF008473.0E-132069IPR001471AP2/ERF domain
PRINTSPR003672.0E-102132IPR001471AP2/ERF domain
CDDcd000181.78E-302179No hitNo description
SuperFamilySSF541716.54E-212178IPR016177DNA-binding domain
PRINTSPR003672.0E-104359IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MENGYVGQQE KCFSSIDQVS YRGVRQRKWG KWVSEIREPG KKTRIWLGSY ETAEMAAAAY  60
DSASLYLRGC GSHLNFPELA HSFPQTASSS SKHVQAAAQE AALMFKPGGS SEPELGSSQG  120
LSRVGLSPDQ IQAINEFPLD SPRLGWMHDL AVNDCAELYG HYFVQYDRDD FYEMQHQQSI  180
MGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-172177360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-172182668ATERF1
3gcc_A1e-172182668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g037960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501761.11e-136PREDICTED: ethylene-responsive transcription factor ERF022-like
RefseqXP_010501762.11e-136PREDICTED: ethylene-responsive transcription factor ERF022-like
RefseqXP_010501763.11e-136PREDICTED: ethylene-responsive transcription factor ERF022-like
SwissprotQ9LQ281e-86ERF22_ARATH; Ethylene-responsive transcription factor ERF022
TrEMBLR0GT161e-94R0GT16_9BRAS; Uncharacterized protein
STRINGXP_010501761.11e-135(Camelina sativa)
STRINGXP_010501762.11e-135(Camelina sativa)
STRINGXP_010501763.11e-135(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33760.13e-76ERF family protein