PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g039000.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 169aa    MW: 19223.1 Da    PI: 6.2805
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g039000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF42.49.2e-14251150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ien+   ++tf kR++ i  K +ELS LC+a+v  +++s++g  y++ 
  Csa03g039000.1  2 KKIENYVDGTITFYKRKQKIYTKLSELSLLCGADVGFLVYSNSGITYTFG 51
                    68**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.5E-7153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.521154IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.89E-16168IPR002100Transcription factor, MADS-box
PfamPF003192.6E-14350IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-51631IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-53152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MKKIENYVDG TITFYKRKQK IYTKLSELSL LCGADVGFLV YSNSGITYTF GSPSFKIIAK  60
RFLNGEGSSS TSLLQQSNID VQHKEKMEEL CKVYNSILEK SDAEKHKGMV MAKAEAETLP  120
VEKDTWWRVD PTTIKDMEVL KQLLEKCEDL YEKLHEEVVS KNQIENAP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g039000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501794.11e-122PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLD7LMQ21e-58D7LMQ2_ARALL; Uncharacterized protein
STRINGXP_010501794.11e-121(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.11e-51AGAMOUS-like 64