PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g039070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 171aa    MW: 19153.4 Da    PI: 8.8417
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g039070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.72.3e-171054147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg++T  Ed+++v+++ ++G++ W++Ia +++ gRt++++k++w+++
   Csa03g039070.1 10 RGNFTDSEDQIIVKLHSLFGNK-WSLIAGKLP-GRTDNEIKNYWNTH 54
                     89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8559IPR017930Myb domain
SMARTSM007171.1E-15957IPR001005SANT/Myb domain
PfamPF002493.5E-151054IPR001005SANT/Myb domain
SuperFamilySSF466891.64E-151071IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-231156IPR009057Homeodomain-like
CDDcd001671.31E-121255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
PTLTLVSLXR GNFTDSEDQI IVKLHSLFGN KWSLIAGKLP GRTDNEIKNY WNTHIKRKLL  60
SRGIDPNTHN SIIQPKTAAF HSRNRDVKPT CHHVNAYVKL NCASASGTTS DEDLRLSVDR  120
DYRFDIVDSE LNLNLTLGSS PNRWAARDVC VCNLGSREPC MNCQTAKWVL *
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. {ECO:0000250|UniProtKB:Q38850}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g039070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2079913e-57AF207991.1 Arabidopsis thaliana putative transcription factor (MYB8) mRNA, complete cds.
GenBankAY5195613e-57AY519561.1 Arabidopsis thaliana MYB transcription factor (At1g35515) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501798.11e-124PREDICTED: transcription repressor MYB6-like
SwissprotQ9SDS87e-68MYB8_ARATH; Transcription factor MYB8
TrEMBLR0GLS93e-60R0GLS9_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010501798.11e-123(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G35515.13e-70high response to osmotic stress 10
Publications ? help Back to Top
  1. Zhu J, et al.
    Retraction for Zhu et al., HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants.
    Proc. Natl. Acad. Sci. U.S.A., 2010. 107(31): p. 13972
    [PMID:20622156]