PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g051450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 164aa    MW: 18947 Da    PI: 4.9183
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g051450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.61.7e-1299159267
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklk 67 
                      Y++++   GF+vrk++ k +  n+++++  +vCskeg+r+e+kkk   ++ ++  tr+gCka++ 
  Csa03g051450.1  99 AYEKFGGLHGFDVRKQQRKIK--NNKVVRLLYVCSKEGFRKETKKK---TSYSQRITRCGCKAHMA 159
                     599***********9986665..6679***************9988...889999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.0E-999159IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MENSHEVVHD DQYESSMQVS PLGEPSCLSQ KQFEFKAEKY DSVSDDDKFE EEEEDDIANK  60
EDYVETEEIS TLEPNTKNEK KDELCIGMEF SSDESAHKAY EKFGGLHGFD VRKQQRKIKN  120
NKVVRLLYVC SKEGFRKETK KKTSYSQRIT RCGCKAHMAC YLT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g051450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513339.11e-98PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLR0H6H21e-57R0H6H2_9BRAS; Uncharacterized protein
STRINGXP_010513339.15e-98(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM6200613
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.23e-08FAR1 family protein