PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g051720.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 240aa    MW: 27992.5 Da    PI: 9.307
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g051720.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.88.9e-173380148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +l+ ++ ++G g W+  ++  g++Rt+k+c++rw++yl
   Csa03g051720.1 33 RGPWTVEEDMKLISYISLHGEGKWNFLSHSAGLNRTGKSCRLRWLNYL 80
                     89********************************************97 PP
2Myb_DNA-binding45.71.5e-1486129146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg  + +E+ ++++++ ++G++ W++Ia++++ gRt++++k++w++
   Csa03g051720.1  86 RGDISVQEQFIILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 129
                      5666889***************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.1382884IPR017930Myb domain
SuperFamilySSF466893.56E-3031127IPR009057Homeodomain-like
SMARTSM007171.3E-143282IPR001005SANT/Myb domain
PfamPF002497.8E-163380IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-213487IPR009057Homeodomain-like
CDDcd001671.06E-93580No hitNo description
SMARTSM007173.5E-1385133IPR001005SANT/Myb domain
PROSITE profilePS5129416.51485135IPR017930Myb domain
PfamPF002492.4E-1386129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2188133IPR009057Homeodomain-like
CDDcd001679.06E-990129No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MNICRTESSN CETLKRKEEV KKFKKKIEIE TRRGPWTVEE DMKLISYISL HGEGKWNFLS  60
HSAGLNRTGK SCRLRWLNYL RPDIRRGDIS VQEQFIILEL HSRWGNRWSK IAQHLPGRTD  120
NEIKNYWRTR VQKHAKLLKC DVNSKQFKDI IKHYWMPRLL ERIASTQNVE SVPNQYSSAT  180
TAATSYTSSS SESVRSSFYG GDQMEYGTKL DSNGGDWFND GDALETLWSF DELNNWLLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-242213316126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g051720.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500311.11e-179PREDICTED: transcription factor MYB108-like
SwissprotQ10MB41e-79MYB2_ORYSJ; Transcription factor MYB2
TrEMBLR0I7Z81e-125R0I7Z8_9BRAS; Uncharacterized protein
STRINGXP_010500311.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.11e-116myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]