PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g052920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C3H
Protein Properties Length: 85aa    MW: 9105.47 Da    PI: 8.8616
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g052920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-06730327
                    S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                     ++C++++ tG C    +Ck++H++
  Csa03g052920.1  7 IPECSNYLLTGNCDL-KKCKYHHSM 30
                    589************.*******95 PP
2zf-CCCH29.21.6e-095275326
                    S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                    ++ C++f+r+G Ck G+ CkF H+
  Csa03g052920.1 52 QAVCPDFSRFGLCKSGPACKFDHS 75
                    689********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.554431IPR000571Zinc finger, CCCH-type
SMARTSM003560.086430IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4730IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-74775IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.7884977IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-44976IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-75275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-45476IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MPTRPGIPEC SNYLLTGNCD LKKCKYHHSM NITPIEHGLA LNNKGLPLRP NQAVCPDFSR  60
FGLCKSGPAC KFDHSSSSSS GSKL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g052920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010496677.11e-47PREDICTED: zinc finger CCCH domain-containing protein 13-like
SwissprotQ3ECU86e-32C3H13_ARATH; Zinc finger CCCH domain-containing protein 13
TrEMBLD7KC262e-30D7KC26_ARALL; Zinc finger (CCCH-type) family protein
STRINGXP_010496677.14e-47(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15633917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48195.18e-34C3H family protein