PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g053880.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 282aa MW: 30825.7 Da PI: 10.6623

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g053880.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	39.1	1.8e-12	100	144	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky Csa03g053880.1 100 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 144 7***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	7.643	1	25	IPR017884	SANT domain
PROSITE profile	PS51294	16.873	93	149	IPR017930	Myb domain
SuperFamily	SSF46689	6.8E-17	95	150	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.8E-17	97	147	IPR006447	Myb domain, plants
SMART	SM00717	2.3E-10	97	147	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-11	98	143	IPR009057	Homeodomain-like
CDD	cd00167	8.34E-10	100	145	No hit	No description
Pfam	PF00249	6.7E-11	100	144	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MASMVPSKTL EQVKKHYQIL LEDVKAIENG QVPLPRYHHN RKGLIVDEAA ATSPANRDSH 60 SSGSSEKKPN HGTSGISSSN GGGGRSSGSR AEQERRKGIP WTEEEHRLFL LGLDKFGKGD 120 WRSISRNFVI SRTPTQVASH AQKYFIRLNS MNRDRRRSSI HDITTVNNQP PAVTGGQQQQ 180 QVVKHRPAQP QPQPQPQPQP QQHHPPTMAG LGMYGNAPVG QPIIAPHDHM GSAVGTPVML 240 PPPMGTHHHH HHHHLGVAPY AVPAYPVPPL PQPHPAPSTM H*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269\|PubMed:12172034, ECO:0000269\|PubMed:22773748}.
UniProt	Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250\|UniProtKB:Q8LH59}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g053880.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269\|PubMed:12172034}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY086906	0.0	AY086906.1 Arabidopsis thaliana clone 29302 mRNA, complete sequence.
GenBank	AY519528	0.0	AY519528.1 Arabidopsis thaliana MYB transcription factor (At1g49010) mRNA, complete cds.
GenBank	BT024862	0.0	BT024862.1 Arabidopsis thaliana At1g49010 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019099439.1	0.0	PREDICTED: transcription factor DIVARICATA-like
Swissprot	B8A9B2	2e-64	MYBS1_ORYSI; Transcription factor MYBS1
Swissprot	Q8LH59	2e-64	MYBS1_ORYSJ; Transcription factor MYBS1
TrEMBL	A0A3P5YCF3	1e-146	A0A3P5YCF3_BRACM; Uncharacterized protein
STRING	XP_010461715.1	1e-152	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10304	25	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	1e-112	MYB family protein

Publications ? help Back to Top
Hong YF, et al. Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals. Plant Cell, 2012. 24(7): p. 2857-73 [PMID:22773748]