PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g055420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 338aa    MW: 37796.7 Da    PI: 7.136
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g055420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94e-32196251156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                     k+r++WtpeLH+rFv+a++qLGG+ +AtPk+i+e+m+ +gLt+++vkSHLQkYRl+
  Csa03g055420.1 196 KQRRCWTPELHRRFVDALQQLGGPGVATPKQIREHMQEEGLTNDEVKSHLQKYRLH 251
                     79****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.451193253IPR017930Myb domain
SuperFamilySSF466895.91E-18194254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-28195254IPR009057Homeodomain-like
TIGRFAMsTIGR015571.8E-26196251IPR006447Myb domain, plants
PfamPF002493.1E-9198249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MGSLGDELSL GSICGSRRGV IMNVVAIEDE HVKKLEEEKR KIESSQLELP LSLQLLNDAI  60
LYLKEENKRC SEMNAQPLLK DFISLDKPMS EEIDMQLLKR DELIREKKFQ QWRANDDHIS  120
DTKTKNKLGV QRNGEKSSML LVPKVETGLG LGLTSSSIRR KGIVASSRGF TSNSMPQPPP  180
PPPQQPAFLQ QQALRKQRRC WTPELHRRFV DALQQLGGPG VATPKQIREH MQEEGLTNDE  240
VKSHLQKYRL HIRKPNSNAE KQSAVVLGFN LWNSSSQEEE ETVKGGESSK ISNSQSDSPQ  300
GPLQLPSTTT TTGGDSSMED VEDAKSESFQ MERLRSP*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phosphate signaling in roots. {ECO:0000250|UniProtKB:Q9FX67}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g055420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2216310.0AK221631.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-96-G04.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500499.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotQ9FX840.0HHO6_ARATH; Transcription factor HHO6
TrEMBLA0A178WF130.0A0A178WF13_ARATH; Uncharacterized protein
STRINGXP_010500499.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139271824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49560.11e-161G2-like family protein
Publications ? help Back to Top
  1. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]