PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g055610.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 398aa MW: 43129.9 Da PI: 9.6654

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g055610.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	44.9	2.5e-14	318	368	5	55
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 +r++r++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+k+ e+ k+ Csa03g055610.1 318 RRQKRMIKNRESAARSRARKQAYTLELEAEIESLKQLNQDLQKKQAEIMKT 368 79***************************************9887776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.3E-13	314	378	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.496	316	367	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-13	318	367	No hit	No description
CDD	cd14707	8.28E-24	318	369	No hit	No description
SuperFamily	SSF57959	6.33E-10	318	367	No hit	No description
Pfam	PF00170	3.4E-12	318	369	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	321	336	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence Send to blast
MGTHIDFDNL GVDSSGGNGC STYQSKPLAR QSSLYSLTFD ELQNTLGEPG KDFGSMNMDE 60 LLKNIWTAEE AQAFMTTTPS SVAASGPSGF VPGGNVLQRQ GSLTLPRTLS QKTVDEVWKH 120 LNSKDGSNGN GRTDVPERQQ TLGEMTLEDF LLRAGVVKED TNSTQQNDNS SGFYANNGAA 180 GLGFGFGQPN QNSISFNSNN DSMIFNQAPG SGLKVGGKMQ QQQKPHQQQQ HPYQRLPPTI 240 FPKQANVAFA PVNLVNRGLF DAGVDGPVNS NMGGAGVTVA TTSPGTSSAE NNTWSSPVPY 300 VFGRGRRSNT GLEKVVERRQ KRMIKNRESA ARSRARKQAY TLELEAEIES LKQLNQDLQK 360 KQAEIMKTQN SEVKESSKPP PLLAKTQSLR RTLTGPW*

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence Send to blast

MGTHIDFDNL GVDSSGGNGC STYQSKPLAR QSSLYSLTFD ELQNTLGEPG KDFGSMNMDE  60
LLKNIWTAEE AQAFMTTTPS SVAASGPSGF VPGGNVLQRQ GSLTLPRTLS QKTVDEVWKH  120
LNSKDGSNGN GRTDVPERQQ TLGEMTLEDF LLRAGVVKED TNSTQQNDNS SGFYANNGAA  180
GLGFGFGQPN QNSISFNSNN DSMIFNQAPG SGLKVGGKMQ QQQKPHQQQQ HPYQRLPPTI  240
FPKQANVAFA PVNLVNRGLF DAGVDGPVNS NMGGAGVTVA TTSPGTSSAE NNTWSSPVPY  300
VFGRGRRSNT GLEKVVERRQ KRMIKNRESA ARSRARKQAY TLELEAEIES LKQLNQDLQK  360
KQAEIMKTQN SEVKESSKPP PLLAKTQSLR RTLTGPW*

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g055610.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269\|PubMed:10636868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF093544	0.0	AF093544.1 Arabidopsis thaliana clone 1 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds.
GenBank	AK226983	0.0	AK226983.1 Arabidopsis thaliana mRNA for abscisic acid responsive elements-binding factor, complete cds, clone: RAFL09-41-C22.
GenBank	BT008575	0.0	BT008575.1 Arabidopsis thaliana clone U19471 putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.
GenBank	BT008647	0.0	BT008647.1 Arabidopsis thaliana clone RAFL09-77-C02 (R19471) putative abscisic acid responsive elements-binding factor (At1g49720) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500522.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4
Refseq	XP_010500523.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 4
Swissprot	Q9M7Q5	0.0	AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBL	A0A178WH34	0.0	A0A178WH34_ARATH; AtABF1
STRING	XP_010500522.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	0.0	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877]