PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g055890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 186aa    MW: 20650.7 Da    PI: 10.1592
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g055890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.82.2e-12555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +v ++G+g W+tI +          R+  ++k++w++
   Csa03g055890.1  5 KQKWTQEEESALKSGVIKHGPGKWRTILKDPEfsgvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.594158IPR017930Myb domain
SuperFamilySSF466891.63E-15271IPR009057Homeodomain-like
SMARTSM007175.4E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.9E-14456IPR009057Homeodomain-like
PfamPF002495.1E-9555IPR001005SANT/Myb domain
CDDcd116601.30E-18656No hitNo description
SMARTSM005267.7E-9122185IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.36E-11125185IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.6E-11126185IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.204126185IPR005818Linker histone H1/H5, domain H15
PfamPF005383.6E-6131185IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGAPKQKWTQ EEESALKSGV IKHGPGKWRT ILKDPEFSGV LYLRSNVDLK DKWRNMSVMA  60
NGWGSREKSR LAVKRTLSLP RQEENSLALT PSLQSDEEMV DAKHYSTTGS SALQVQVSST  120
PAPRRPNVRL DSLIMEAIAT MKEPGGCNKT TIGAYIEDQY HAPPDFKRLL STKLKYMTAC  180
GKLVK*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g055890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATU836241e-127U83624.1 Arabidopsis thaliana telomere repeat binding factor 1 (TRB1) mRNA, complete cds.
GenBankAY0627361e-127AY062736.1 Arabidopsis thaliana Unknown protein (At1g49950; F2J10.16) mRNA, complete cds.
GenBankAY0879941e-127AY087994.1 Arabidopsis thaliana clone 40229 mRNA, complete sequence.
GenBankAY5195391e-127AY519539.1 Arabidopsis thaliana MYB transcription factor (At1g49950) mRNA, complete cds.
GenBankBT0096771e-127BT009677.1 Arabidopsis thaliana At1g49950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500545.11e-137PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_010500546.11e-137PREDICTED: telomere repeat-binding factor 1-like isoform X1
RefseqXP_010500547.11e-137PREDICTED: telomere repeat-binding factor 1-like isoform X1
SwissprotQ8VWK41e-117TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLR0GJQ01e-124R0GJQ0_9BRAS; Uncharacterized protein
STRINGXP_010500545.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87222539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-119telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]