PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g057970.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 228aa    MW: 25603 Da    PI: 6.9277
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g057970.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-1171117453
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 
                     ++  rE++RRdr+N++f eL ++l +    + +K +K++i   A++ +++
  Csa03g057970.1  71 SKACREKQRRDRLNDKFTELSSILEPG---RTPKTDKVAIINDAIRMVNH 117
                     5678**********************8...8**************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.41167118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.48E-870123No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1171140IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-971117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1271136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-873124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MVSPENTNWL SDYPLVDGAF SDHNPSFPWQ IDVSSSVSVE VDGFLCDSDV IKEPGSRKRI  60
KTESCTAGSS SKACREKQRR DRLNDKFTEL SSILEPGRTP KTDKVAIIND AIRMVNHARD  120
EAQKLKDLNS SLQEKIKEVK DEKSELRDEK HKLKIEKERM EQQLKEIKTQ PQPQPCFLPN  180
PPSLSQAQAP GSKLVPFTTY PGFAMWQFMP PAAVDTSQDH VLRPPVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g057970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886320.0AF488632.1 Arabidopsis thaliana clone bHLH115 putative bHLH transcription factor mRNA, complete cds.
GenBankAY0856190.0AY085619.1 Arabidopsis thaliana clone 16284 mRNA, complete sequence.
GenBankBT0024330.0BT002433.1 Arabidopsis thaliana bHLH transcription factor, putative (At1g51070) mRNA, complete cds.
GenBankBT0062730.0BT006273.1 Arabidopsis thaliana At1g51070 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010500676.11e-168PREDICTED: transcription factor bHLH115
SwissprotQ9C6821e-153BH115_ARATH; Transcription factor bHLH115
TrEMBLR0GNJ41e-154R0GNJ4_9BRAS; Uncharacterized protein
STRINGXP_010500676.11e-168(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51070.11e-138bHLH family protein
Publications ? help Back to Top
  1. Liang G,Zhang H,Li X,Ai Q,Yu D
    bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(7): p. 1743-1755
    [PMID:28369511]