PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g057990.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 98aa MW: 10543.7 Da PI: 4.2976

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g057990.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	29.5	2.1e-09	11	46	65	100
DUF260 65 AearardPvyGavgvilklqqqleqlkaelallkee 100 A+ar+ dPvyG+ g+i++lq+qle l+++la +++e Csa03g057990.1 11 ANARVLDPVYGCGGTISSLQRQLEALQTQLAFAQAE 46 99*****************************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	9.1E-7	11	44	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 98 aa Download sequence Send to blast
MDEQYRPVPG ANARVLDPVY GCGGTISSLQ RQLEALQTQL AFAQAELTHI RTLCRIDTKP 60 SSYTASTVTF PTNKDFSSDV DMAFVYEDGS GDSLSSC*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g057990.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin. {ECO:0000269\|PubMed:17485849}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019091292.1	4e-50	PREDICTED: LOB domain-containing protein 3-like
Swissprot	Q9SA51	3e-42	LBD3_ARATH; LOB domain-containing protein 3
TrEMBL	A0A1J3IV39	2e-44	A0A1J3IV39_NOCCA; LOB domain-containing protein 3
STRING	XP_010459193.1	1e-49	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16530.1	1e-44	ASYMMETRIC LEAVES 2-like 9

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]