PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g058110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 347aa    MW: 38994.1 Da    PI: 6.5801
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g058110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88e-05178197120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  Csa03g058110.1 178 FSCPLCFKTFNRYNNMQMHM 197
                     89*****************9 PP
2zf-C2H2130.0003262284123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C  Cgk F  k + ++H +++
  Csa03g058110.1 262 FACRRCGKAFAVKGDWRTHEKNC 284
                     78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.66178205IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.9E-5178197IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280180200IPR007087Zinc finger, C2H2
SuperFamilySSF576673.41E-6244282No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5249282IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.767262282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MSHPACSNLL NNGCDQNNIN YSTSLSYIYN SQGSFYYPNT TNPSYTNPTP TTSTFPSSPP  60
LREALPLLSL SPIRHQEQQD RAYFMDTDQI SSSIFLDDPH VTVDLHLGLP NYGVGGESIG  120
SYIAPDAATE EQEQDHDQGV EVTVESHLHD DDDHGDLHRG HHYWIPTPSQ ILIGPTQFSC  180
PLCFKTFNRY NNMQMHMWGH GSQYRKGPES LRGTQPTGML RLPCFCCAPG CKNNIDHPRA  240
KPLKDFRTLQ THYKRKHGSR PFACRRCGKA FAVKGDWRTH EKNCGKLWYC SCGSDFKHKR  300
SLKDHVKAFG NGHVPIGIDS FGGDLEDYYE AASDIEQQDD SNNNEC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g058110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ3118100.0AJ311810.2 Arabidopsis thaliana mRNA for WIP5 protein (At1g51220 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010501954.10.0PREDICTED: zinc finger protein WIP5-like
SwissprotQ8W0310.0ZWIP5_ARATH; Zinc finger protein WIP5
TrEMBLR0IQE20.0R0IQE2_9BRAS; Uncharacterized protein
STRINGXP_010501954.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51220.10.0WIP domain protein 5
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]