PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g062210.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 334aa MW: 38129.4 Da PI: 6.9104

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g062210.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	372.8	4.3e-114	20	333	67	374
GRAS 67 setseknsseelaalklfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgsk 155 +t+++ns+ e ++ +++++P+++f+hltaNqaIl+a+e++ ++Hi+D+disqGlQWp+L+qaLa+R+ ++ppslRiTg+g+ + Csa03g062210.1 20 FRTKNNNSDFESCYYLWLNQLTPFIRFGHLTANQAILDATETNdnGALHILDLDISQGLQWPPLMQALAERSsnpnSPPPSLRITGCGR----DL 110 34455678888888888**********************9977899*******************988877799*****.... PP GRAS 156 eeleetgerLakfAeelgvpfefnvl......vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveq 244 + l++tg+rL++fA++lg++f+f++l +a l +++l +L++ +gE++aVn+v+ lh+++++++++ ++L+++ksl+P++v+++e+ Csa03g062210.1 111 TGLNRTGDRLTRFANSLGLQFQFHTLviveedIAGLLLQIRLLALSFVQGETIAVNCVHFLHKFFNDDGDMIG---HFLSVIKSLNPRIVTMAER 202 ***********************976333223334444677778889******************99...*************** PP GRAS 245 eadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339 ea+h+++sFl+rf+ea+++y+a+fdslea+lp++s+er ++E++++g+ei +vva+e +er++rh+++e W+e+++++GF +vp++++a +qakl Csa03g062210.1 203 EANHGDHSFLNRFSEAVDHYVAIFDSLEATLPPNSRERLTLEQRWFGKEIFDVVAAEARERKQRHRRFEIWEEMMKRFGFVNVPIGSFALSQAKL 297 ******************************************************************************************* PP GRAS 340 llrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 llr ++ s+gy+++ ++sl+lgW++r L+svS+W+ Csa03g062210.1 298 LLRLHYpSEGYNLQFLNNSLFLGWQSRLLFSVSSWK 333 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.276	1	312	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-111	20	333	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MGNNNSTVFT SSVCKEQFLF RTKNNNSDFE SCYYLWLNQL TPFIRFGHLT ANQAILDATE 60 TNDNGALHIL DLDISQGLQW PPLMQALAER SSNPNSPPPS LRITGCGRDL TGLNRTGDRL 120 TRFANSLGLQ FQFHTLVIVE EDIAGLLLQI RLLALSFVQG ETIAVNCVHF LHKFFNDDGD 180 MIGHFLSVIK SLNPRIVTMA EREANHGDHS FLNRFSEAVD HYVAIFDSLE ATLPPNSRER 240 LTLEQRWFGK EIFDVVAAEA RERKQRHRRF EIWEEMMKRF GFVNVPIGSF ALSQAKLLLR 300 LHYPSEGYNL QFLNNSLFLG WQSRLLFSVS SWK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-56	38	332	103	378	Protein SCARECROW
5b3h_A	2e-56	38	332	102	377	Protein SCARECROW
5b3h_D	2e-56	38	332	102	377	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for axillary (lateral) shoot meristem formation during vegetative development. Seems to act upstream of REVOLUTA. {ECO:0000269\|PubMed:12730136}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g062210.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC002328	0.0	AC002328.2 Genomic sequence for Arabidopsis thaliana BAC F20N2 from chromosome I, complete sequence.
GenBank	AC005223	0.0	AC005223.1 Arabidopsis thaliana chromosome I BAC T5A14, complete sequence.
GenBank	AY196482	0.0	AY196482.1 Arabidopsis thaliana lateral suppressor (LAS) mRNA, complete cds.
GenBank	BT026519	0.0	BT026519.1 Arabidopsis thaliana At1g55580 mRNA, complete cds.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010502027.1	0.0	PREDICTED: scarecrow-like protein 18, partial
Swissprot	Q9ZWC5	0.0	SCL18_ARATH; Scarecrow-like protein 18
TrEMBL	A0A1J3E1D6	0.0	A0A1J3E1D6_NOCCA; Scarecrow-like protein 18
STRING	XP_010502027.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11329	27	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55580.1	0.0	GRAS family protein

Publications ? help Back to Top
Zhang B, et al. Novel function of a putative MOC1 ortholog associated with spikelet number per spike in common wheat. Sci Rep, 2015. 5: p. 12211 [PMID:26197925]