PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g062230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 400aa MW: 44033.5 Da PI: 6.1103

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g062230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.3	4.9e-31	226	283	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+vkg+++prsY++Ct +gC+vkk+ver a+d k++++ Y g Hnh+ Csa03g062230.1 226 EDGFRWRKYGQKVVKGNPNPRSYFKCTVNGCNVKKHVERGADDFKILVTSYDGIHNHP 283 7********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-30	211	285	IPR003657	WRKY domain
SuperFamily	SSF118290	5.89E-26	220	285	IPR003657	WRKY domain
PROSITE profile	PS50811	31.835	220	285	IPR003657	WRKY domain
SMART	SM00774	2.4E-35	225	284	IPR003657	WRKY domain
Pfam	PF03106	2.8E-23	226	283	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009960	Biological Process	endosperm development
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MTSCWAPLST PSPRTILAMM GQTNDGLNPI SEIFPQTNLP RDHADQSGQR PGLGERLAAK 60 VGLNLPRLDI ENRSPLDAFF RSAAAPSPIG AIPPGFSPST LLQSPKMVTD SSQIIPQSLA 120 TNYRPEEMVK PSGEDNATAM IFNNDLPYQS INVDQPPLDV FDDILTEESI YMPPYESHVE 180 RPIGAPVVPS SEPERFEVSS NMIGATRTSK AQRIILQMES DEDNPEDGFR WRKYGQKVVK 240 GNPNPRSYFK CTVNGCNVKK HVERGADDFK ILVTSYDGIH NHPPPPTRSR LTSGPRNRSG 300 ITMSQNHGNR TSRAPVPSSS VITSMEMMPI TSFTPQVDLT RVYKTGLSKL PNIPAYQNPD 360 YTYQNADEQI INVAHDDGSG IYGGIMHRLF TGFGMNFDL*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MTSCWAPLST PSPRTILAMM GQTNDGLNPI SEIFPQTNLP RDHADQSGQR PGLGERLAAK  60
VGLNLPRLDI ENRSPLDAFF RSAAAPSPIG AIPPGFSPST LLQSPKMVTD SSQIIPQSLA  120
TNYRPEEMVK PSGEDNATAM IFNNDLPYQS INVDQPPLDV FDDILTEESI YMPPYESHVE  180
RPIGAPVVPS SEPERFEVSS NMIGATRTSK AQRIILQMES DEDNPEDGFR WRKYGQKVVK  240
GNPNPRSYFK CTVNGCNVKK HVERGADDFK ILVTSYDGIH NHPPPPTRSR LTSGPRNRSG  300
ITMSQNHGNR TSRAPVPSSS VITSMEMMPI TSFTPQVDLT RVYKTGLSKL PNIPAYQNPD  360
YTYQNADEQI INVAHDDGSG IYGGIMHRLF TGFGMNFDL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-24	216	285	8	77	Probable WRKY transcription factor 4
2lex_A	2e-24	216	285	8	77	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Modulates seed size by negatively regulating the cellularization of syncytial endosperm (PubMed:16293693). {ECO:0000250\|UniProtKB:Q9SI37, ECO:0000269\|PubMed:16293693}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g062230.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019096699.1	1e-148	PREDICTED: probable WRKY transcription factor 10
Swissprot	Q9LG05	5e-83	WRK10_ARATH; Probable WRKY transcription factor 10
TrEMBL	A0A0D3BNA7	1e-108	A0A0D3BNA7_BRAOL; Uncharacterized protein
STRING	Bostr.6758s0015.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10299	17	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55600.1	4e-74	WRKY DNA-binding protein 10

Publications ? help Back to Top
Li J,Nie X,Tan JL,Berger F Integration of epigenetic and genetic controls of seed size by cytokinin in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2013. 110(38): p. 15479-84 [PMID:24003120] Fatihi A,Zbierzak AM,Dörmann P Alterations in seed development gene expression affect size and oil content of Arabidopsis seeds. Plant Physiol., 2013. 163(2): p. 973-85 [PMID:24014578] Liu P, et al. Arabidopsis RAN1 mediates seed development through its parental ratio by affecting the onset of endosperm cellularization. Mol Plant, 2014. 7(8): p. 1316-1328 [PMID:24719465] Xiao YG,Sun QB,Kang XJ,Chen CB,Ni M SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development. New Phytol., 2016. 209(2): p. 636-49 [PMID:26389843] Meng LS,Wang YB,Loake GJ,Jiang JH Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade. Front Plant Sci, 2016. 7: p. 1645 [PMID:27857719] Meng LS,Wang YB,Loake GJ,Jiang JH Corrigendum: Seed Embryo Development Is Regulated via an AN3-MINI3 Gene Cascade. Front Plant Sci, 2017. 8: p. 1073 [PMID:28616014]