PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04330s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 174aa    MW: 19594.6 Da    PI: 4.1328
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04330s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2262.3e-081351956
             AP2 19 IrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    Irdps+   r+r +lg+f taeeAa  +++a+ +l+g+
  Csa04330s010.1  1 IRDPST---RTRLWLGTFATAEEAALGYDRAAIRLKGH 35
                    788865...49************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.24E-10142IPR016177DNA-binding domain
CDDcd000182.26E-19141No hitNo description
SMARTSM003801.4E-11148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.9E-17141IPR001471AP2/ERF domain
PROSITE profilePS5103213.775142IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
IRDPSTRTRL WLGTFATAEE AALGYDRAAI RLKGHNAQTN FLTPPPPPPL PPVIDLETVS  60
GCDSAKESQI SSSLCSPTSV LRFGHYEETE FRTEPMTKQE EALLSSDPFF LPDLFRSGDF  120
FWDSKFTPDP LFLLDETTHN NQNNNTVSES FPLGVIGDFS SWDVDEFFQD HLFD
Functional Description ? help Back to Top
Source Description
UniProtComponent of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16832061}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04330s010.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:16832061}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508039.11e-125PREDICTED: ethylene-responsive transcription factor CRF5-like
SwissprotO823393e-86CRF5_ARATH; Ethylene-responsive transcription factor CRF5
TrEMBLR0FY072e-89R0FY07_9BRAS; Uncharacterized protein
STRINGXP_010508039.11e-125(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25782571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46310.15e-83cytokinin response factor 5
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Striberny B, et al.
    Cytokinin Response Factor 5 has transcriptional activity governed by its C-terminal domain.
    Plant Signal Behav, 2017. 12(2): p. e1276684
    [PMID:28045578]