PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04655s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 160aa MW: 17912.7 Da PI: 4.5265

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04655s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	51.2	5e-16	1	115	31	99
TCP 31 rfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........................ssssaseceaesssssasnsssg............ 88 ++F L+deLGf +d++t+ WLl++a+pai ++tg + Csa04655s010.1 1 QLFNLTDELGFQTDGETVGWLLRNAEPAIFAATGHgvsttpndvihssnnnfhnyysncnN---------------------Ytihgncsytidg 74 68*********************************77544444444444444444333330.....................0344444444445 PP TCP 89 ..............................kaaksaakskk 99 + k++ + + Csa04655s010.1 75 dnwtgvntvhhemvfpvsimkehaasscfpVKDKEDVSDMS 115 55555555554444444333333333333322222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	15.945	1	32	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	5.7E-13	1	108	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
QLFNLTDELG FQTDGETVGW LLRNAEPAIF AATGHGVSTT PNDVIHSSNN NFHNYYSNCN 60 NYTIHGNCSY TIDGDNWTGV NTVHHEMVFP VSIMKEHAAS SCFPVKDKED VSDMSSQTQP 120 AMLPPLIHHQ QQQEQEPQPQ FELGKVEMAA DEKRYVWSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04655s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010495849.1	1e-119	PREDICTED: transcription factor TCP16-like
Swissprot	Q9M1U4	2e-27	TCP16_ARATH; Transcription factor TCP16
TrEMBL	D7LNL8	1e-40	D7LNL8_ARALL; Uncharacterized protein
STRING	XP_010495849.1	1e-118	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	1e-28	TCP domain protein 16

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]