PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04838s010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GRAS

Protein Properties

Length: 192aa MW: 20926.4 Da PI: 4.5366

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04838s010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	83.4	3.9e-26	98	192	1	104
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv++L++cAeav++++l+la+al++r+ la++++ +m ++a+yf+eALa+r++r ++ps+++ ++s eel + f++ sP+lkf+h Csa04838s010.1 98 LVQALVACAEAVQQENLSLADALVKRVGSLAASQAGAMGKVATYFAEALARRIYR--------IHPSSAAVDTSFEELL-QMNFYDSSPYLKFAH 183 689**************************************************........6666666555555544.446******** PP GRAS 96 ltaNqaIle 104 +taNqaIle Csa04838s010.1 184 FTANQAILE 192 *****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF12041	7.5E-10	10	40	IPR021914	Transcriptional factor DELLA, N-terminal
PROSITE profile	PS50985	18.989	72	192	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.4E-23	98	192	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MVLSNDVVGS SNSFLNDTVH YNPSDLSGWA QTMLSGLSYY PDLDPTRVCD LRPITNDDES 60 CCSSNSSNKR IRLGPWCDSV SSESTRSVVL IEETGIRLVQ ALVACAEAVQ QENLSLADAL 120 VKRVGSLAAS QAGAMGKVAT YFAEALARRI YRIHPSSAAV DTSFEELLQM NFYDSSPYLK 180 FAHFTANQAI LE

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. No effect of the BOI proteins on its stability. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Its activity may be regulated by phytohormones such as auxin and ethylene (By similarity). {ECO:0000250, ECO:0000269\|PubMed:12610625, ECO:0000269\|PubMed:14615596}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04838s010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK117226	1e-172	AK117226.1 Arabidopsis thaliana At5g17490 mRNA for RGA-like protein, complete cds, clone: RAFL16-78-A02.
GenBank	AL391150	1e-172	AL391150.1 Arabidopsis thaliana DNA chromosome 5, BAC clone K3M16 (ESSA project).
GenBank	BT005905	1e-172	BT005905.1 Arabidopsis thaliana At5g17490 gene, complete cds.
GenBank	CP002688	1e-172	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010420475.1	1e-136	PREDICTED: DELLA protein RGL3
Swissprot	Q9LF53	1e-119	RGL3_ARATH; DELLA protein RGL3
TrEMBL	R0H0W3	1e-118	R0H0W3_9BRAS; Uncharacterized protein
STRING	XP_010420475.1	1e-135	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM837	28	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17490.1	1e-117	RGA-like protein 3

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Wild M,Achard P The DELLA protein RGL3 positively contributes to jasmonate/ethylene defense responses. Plant Signal Behav, 2013. 8(4): p. e23891 [PMID:23425858] Shi H,Wei Y,Wang Q,Reiter RJ,He C Melatonin mediates the stabilization of DELLA proteins to repress the floral transition in Arabidopsis. J. Pineal Res., 2016. 60(3): p. 373-9 [PMID:26887824] Shi H,Liu W,Wei Y,Ye T Integration of auxin/indole-3-acetic acid 17 and RGA-LIKE3 confers salt stress resistance through stabilization by nitric oxide in Arabidopsis. J. Exp. Bot., 2017. 68(5): p. 1239-1249 [PMID:28158805] Huang KC,Lin WC,Cheng WH Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis. BMC Plant Biol., 2018. 18(1): p. 40 [PMID:29490615]