PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g003010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 389aa    MW: 43716.7 Da    PI: 8.0717
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g003010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like86.13.4e-27198251155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W+ eLHe+Fv+av+qL G++kA+Pk+ilelm+v+gL +e+v+SHLQk+Rl
  Csa04g003010.1 198 KSRVVWSIELHEQFVNAVNQL-GIDKAVPKRILELMNVPGLNRENVASHLQKFRL 251
                     68*******************.********************************8 PP
2Response_reg74.54e-25131211109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +l+vdD+ + + +l+++l +  y +v+ +++++ al++l+e++  +Dl+l D+ mpgm+G++ll++   e  +lp+i+++a g  +++   ++ G
  Csa04g003010.1  13 ILVVDDDTSCLFILEKMLLRLMY-QVTICSQADVALTILRERKgcFDLVLSDVHMPGMNGYKLLQQVGLEM-DLPVIMMSADGRTTTVMTGINHG 105
                     89*********************.*******************************************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ peel +
  Csa04g003010.1 106 ACDYLIKPIRPEELKN 121
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.9E-1441386IPR017053Response regulator B-type, plant
SuperFamilySSF521722.13E-359138IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23005.8E-4110149No hitNo description
SMARTSM004481.3E-2911123IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.79612127IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.3E-2213121IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.28E-2714126No hitNo description
PROSITE profilePS5129410.949195254IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-28195256IPR009057Homeodomain-like
SuperFamilySSF466891.47E-18196255IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-23198251IPR006447Myb domain, plants
PfamPF002491.6E-5200249IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MAINDQFPNG LRILVVDDDT SCLFILEKML LRLMYQVTIC SQADVALTIL RERKGCFDLV  60
LSDVHMPGMN GYKLLQQVGL EMDLPVIMMS ADGRTTTVMT GINHGACDYL IKPIRPEELK  120
NIWQHVVRRK CVMNKEFRSS LAIEDNNKKN SGSVETVFSA SECSEGSLMK RRTKKKKRSV  180
DREDNENDDL LDPGNSKKSR VVWSIELHEQ FVNAVNQLGI DKAVPKRILE LMNVPGLNRE  240
NVASHLQKFR LYLKRLSGAA SQSKDTECIK RYENIQALVS SGQVHPQTLA ALFGQPIDNH  300
LSASFGVWIP NDDLGRSQTQ NFAVDVSSAS NRSVSVTNPM AVHDLSSSAN FSQKDDVNNN  360
TDHRIRQGYG SNVNEESWIL ERSSRQRY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-19197257464ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176RRTKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00098PBMTransfer from AT2G01760Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g003010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0997260.0AY099726.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
GenBankAY1288870.0AY128887.1 Arabidopsis thaliana putative two-component response regulator protein (At2g01760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502166.10.0PREDICTED: two-component response regulator ARR14-like isoform X2
SwissprotQ8L9Y30.0ARR14_ARATH; Two-component response regulator ARR14
TrEMBLR0H7860.0R0H786_9BRAS; Two-component response regulator
STRINGXP_010502166.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM81502736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01760.10.0response regulator 14