PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g006520.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 174aa MW: 19497.3 Da PI: 10.8247

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g006520.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.8	5.1e-33	37	90	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+ave LGG+ +AtPk +l++m+vkgLt++hvkSHLQ+YR Csa04g006520.1 37 PRLRWTPDLHRCFVNAVEMLGGQYRATPKLVLKMMDVKGLTISHVKSHLQMYRG 90 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.9E-30	33	90	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.485	33	93	IPR017930	Myb domain
SuperFamily	SSF46689	3.4E-15	37	89	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-23	37	89	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-9	38	89	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MGRCGGRNGN GNVTGVGFKG NGGGGGGVRP YVRSPVPRLR WTPDLHRCFV NAVEMLGGQY 60 RATPKLVLKM MDVKGLTISH VKSHLQMYRG SRLTLGKPEE ESSSSSSIRR RRRRQDSEED 120 HLSLHSRNDC LLGFHSFTLS SHSPSLLLRY FYSFIYLLFS DKFFFSFNFI SVS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	3e-20	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	3e-20	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	3e-20	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	3e-20	38	92	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	113	RRRRRR

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g006520.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010502216.1	1e-104	PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
Refseq	XP_010502217.1	1e-104	PREDICTED: putative Myb family transcription factor At1g14600 isoform X2
Swissprot	Q700D9	3e-53	MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBL	E5F709	2e-70	E5F709_9BRAS; Uncharacterized protein
STRING	XP_010502216.1	1e-103	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM363	28	184

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-49	G2-like family protein