PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g008890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 516aa    MW: 56268.1 Da    PI: 8.0416
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g008890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.61.3e-33254310259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers  d++v+ei+Y+g+H he
  Csa04g008890.1 254 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSL-DGQVTEIIYKGQHSHE 310
                     8****************************************.***************7 PP
2WRKY105.13.6e-33418476159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++ C v+k+ver+a+dpk+v++tYeg+Hnh+
  Csa04g008890.1 418 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPACGVRKHVERAANDPKAVVTTYEGKHNHD 476
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-29244312IPR003657WRKY domain
PROSITE profilePS5081123.629248312IPR003657WRKY domain
SuperFamilySSF1182901.11E-25251312IPR003657WRKY domain
SMARTSM007741.7E-36253311IPR003657WRKY domain
PfamPF031061.6E-25254309IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-36403478IPR003657WRKY domain
SuperFamilySSF1182903.01E-29410478IPR003657WRKY domain
PROSITE profilePS5081137.39413478IPR003657WRKY domain
SMARTSM007746.9E-38418477IPR003657WRKY domain
PfamPF031061.6E-25419476IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MAEKKEDQEQ PPLKLLKSST GRPTISLPPR PFGEMFFSGG VGFSPGPMTL VSNLFSDPDE  60
LKSFSQLLAG AMASPAAAAV AAAAVVATAH HQTPVSSVGD GGGGSGGDDV DPRFKQNRPT  120
GLMITQPPGM FTVPPGLSPA TLLDSPSFFG LFSPLQGAFG MTHQQALAQV TAQAVQGNNY  180
VQMQQSQQSE YPSSTQQQQQ QASLIEIPTF STEHRSQIPS PPVQDSSQQG QRETSDISVS  240
EHRSQPQNAD KPADDGYNWR KYGQKQVKGS DFPRSYYKCT HPACPVKKKV ERSLDGQVTE  300
IIYKGQHSHE LPQKRGNNNG SSKNSDVATQ FQTSNSSLNK SKRDQETSQV TTTEQMSEAS  360
DGEEVGNAET SVGEKHVDEP DPKRRNTEVR VSEPVASSHK TVTEPRIIVQ TTSEVDLLDD  420
GYRWRKYGQK VVKGNPYPRS YYKCTTPACG VRKHVERAAN DPKAVVTTYE GKHNHDVPAA  480
RTSSHQLRPN NQHNNSTGNY NQQQPVARLR LKEEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-44254479878Probable WRKY transcription factor 4
2lex_A6e-44254479878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g008890.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247010.0AF224701.1 Arabidopsis thaliana WRKY DNA-binding protein 3 (WRKY3) mRNA, complete cds.
GenBankAK2290360.0AK229036.1 Arabidopsis thaliana mRNA for putative WRKY DNA-binding protein, complete cds, clone: RAFL16-33-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502347.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A178VZF90.0A0A178VZF9_ARATH; WRKY3
STRINGXP_010502347.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]