PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g009800.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24044.5 Da    PI: 8.3602
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g009800.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.87.5e-105796443
                    -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    e k +r v  skRr++++ KA  L+ L +a++av + s++
  Csa04g009800.2 57 ETKQQRAVACSKRRQTVFSKAADLCHLSGANIAVFVTSPS 96
                    77999********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.1E-1646105IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.324696IPR002100Transcription factor, MADS-box
CDDcd002661.03E-2047126No hitNo description
SuperFamilySSF554555.36E-1648133IPR002100Transcription factor, MADS-box
PfamPF003195.4E-95799IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MLLSSFFQTS LSLRVFFLFA LYLFVSVGNI MPSSSTNASE STMKKGTKRK IEIKKRETKQ  60
QRAVACSKRR QTVFSKAADL CHLSGANIAV FVTSPSEITD VVYSFSGYSP AQEIADCYLN  120
RKPPPKIDVK AQSTKLGFWW EDPDLYNSCD DLSELNILED RIERVKKHVL ACLEKKEKSQ  180
PLVANNEQNP ITDEDCDRVS LEHVQQRGAL ISL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g009800.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100054.11e-135PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_019100055.11e-135PREDICTED: agamous-like MADS-box protein AGL97
RefseqXP_019100056.11e-135PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0HBN44e-85R0HBN4_9BRAS; Uncharacterized protein
STRINGXP_010425202.11e-127(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.12e-72AGAMOUS-like 39