PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g011020.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 205aa MW: 22517.1 Da PI: 10.7717

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g011020.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100	1.6e-31	46	101	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++ ++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Csa04g011020.1 46 KNRRCWSQELHRRFLNSLKQLGGPHVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 101 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.011	43	103	IPR017930	Myb domain
SuperFamily	SSF46689	1.27E-17	44	104	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-27	44	104	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.7E-27	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	3.8E-6	48	99	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
DCLQNKPETL VKDLKRNDGE EGKNNNIKLS VTSSSGGGSD GRGQRKNRRC WSQELHRRFL 60 NSLKQLGGPH VATPKQIREL MKVDGLTNDE VKSHLQKYRL HARRPSQTTP TNGNSQNQHF 120 VVVGGIWVPQ TTHSTANAAA SAETTTGIYG PMVSPMPSEW PSHSNFSSRT SEDRSRYSNK 180 GILRCSSPAM SSSTRTKTKD AKIS*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable factor involved in nitrate and phosphate signaling in roots. Integrates nitrate and phosphate starvation responses and adaptation of root architecture, depending on nutrient availabilities. Acts downstream of the nitrate sensor and transporter NPF6.3/NRT1.1. Represses primary root development in response to phosphate deficiency conditions, only when nitrate is present. {ECO:0000269\|PubMed:25723764}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g011020.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by nitrate (PubMed:25723764). Down-regulated under nitrate deprivation conditions (PubMed:27419465). {ECO:0000269\|PubMed:25723764, ECO:0000269\|PubMed:27419465}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY085570	1e-149	AY085570.1 Arabidopsis thaliana clone 157740 mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010502460.1	1e-150	PREDICTED: myb family transcription factor EFM-like isoform X1
Refseq	XP_010502461.1	1e-150	PREDICTED: myb family transcription factor EFM-like isoform X2
Swissprot	Q9LS00	3e-99	HHO1_ARATH; Transcription factor HHO1
TrEMBL	D7LQU6	1e-103	D7LQU6_ARALL; Myb family transcription factor
STRING	XP_010502461.1	1e-150	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13600	18	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G25790.1	8e-90	G2-like family protein

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]