PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g011140.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 344aa    MW: 37619 Da    PI: 4.7295
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g011140.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.97.1e-15127175153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                     s+  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+ a ++++
  Csa04g011140.1 127 SKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAASAYAAKKLEF 175
                     7899*****9.**********72....36******************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-9127175IPR001471AP2/ERF domain
CDDcd000182.01E-19127173No hitNo description
PROSITE profilePS5103218.136128185IPR001471AP2/ERF domain
SMARTSM003803.3E-13128182IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-14128175IPR016177DNA-binding domain
PRINTSPR003671.7E-6129140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-19131178IPR001471AP2/ERF domain
PRINTSPR003671.7E-6151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAERKKRSSV PTNKPYKKPM KKKSLQLNHL PGLSEDLKTM RKIRFVVNDP YATDYSSSEE  60
DERAQRRKRY VCEIDLPFAQ AAATQAESQN SFCQESTNNN NNGVAKTKTK TSACSKKVLS  120
SKPTSVSKPV GVRQRKWGKW AAEIRHPITK TRTWLGTYET LEQAASAYAA KKLEFDALAA  180
ATSAASSNNV SENALSDSNM SGSLISATGS NVEAVSSNNL DKKLLDSTID PEAGESKKAS  240
FGFDFADLQI PEMGCFIDES LIPDACELDF FLTEENNQLL DDYCGIDDLD IIGLECDGPS  300
ELPDYDFSDV DIDLGLLGTT IDKFTFVDHI ATTTSTPLNI ACP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g011140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502475.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
SwissprotQ9LUA21e-170EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLR0FQB40.0R0FQB4_9BRAS; Uncharacterized protein
STRINGXP_010502475.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-162ERF family protein