PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g011320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 391aa    MW: 44528.8 Da    PI: 5.7971
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g011320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix83.92e-2659149286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     W ++e+l Li +r em++ ++++k++k+lWe++s+km      re+gf rsp++C++kw+n+ k++kk k+++ k ts+   ++ y++++e
  Csa04g011320.1  59 WVQDETLSLISLRGEMDNLFNTSKSNKHLWEQISSKMreqgkmREQGFDRSPTMCTDKWRNILKEFKKAKHQDDKATSGGAAKMCYYKEIE 149
                     ****************************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.87551121IPR017877Myb-like domain
SMARTSM007170.00655123IPR001005SANT/Myb domain
CDDcd122032.09E-2757128No hitNo description
Gene3DG3DSA:1.10.10.603.5E-458122IPR009057Homeodomain-like
PfamPF138374.7E-1758150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MYVSDNNPSR DINMMIDVTT SNGDLPTQQQ HHHHQIILGD SSGGEDHEIK TPKKRAETWV  60
QDETLSLISL RGEMDNLFNT SKSNKHLWEQ ISSKMREQGK MREQGFDRSP TMCTDKWRNI  120
LKEFKKAKHQ DDKATSGGAA KMCYYKEIED IFGERNKKVA LYKSPATPPP SSSAKVDSFM  180
QFTDKGFEDT GISFTSVEAN GRPTLNLETQ LDHDGLPLAI ASADPVTANG VPPWNWRDAS  240
GNGGDGHPFV GRIITVKFGE YTRRVGIDGT AEAIKEAIRS AFRLRTRRAF WLEDEEQVVR  300
SLDRDMPLGN YTLHVDEGIA VRVCHYDESD PLPVHQEEKI FYTEEDYRDF LARRGWTCLR  360
EFDAFRNIDM VRNIDNMDDL QPGVLYRGMR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A6e-4053147186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00003PBMTransfer from 484361Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g011320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723700.0AB072370.1 Arabidopsis thaliana mRNA for transcription factor GT-4, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502488.10.0PREDICTED: trihelix transcription factor GT-4-like isoform X1
RefseqXP_019100077.10.0PREDICTED: trihelix transcription factor GT-4-like isoform X2
SwissprotQ9LU920.0TGT4_ARATH; Trihelix transcription factor GT-4
TrEMBLR0HJX10.0R0HJX1_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010502488.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28912768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25990.10.0Trihelix family protein