PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g015670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 356aa MW: 40835.9 Da PI: 7.5411

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g015670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65	2.1e-20	79	161	3	90
FAR1 3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y+ + GF+vrk++ + + ++++++ ++vCskeg+r+e++++ ++ +++ tr+gC+a+++ ++k++++++ ++e++HnH+l+ Csa04g015670.1 79 YQKYGGSHGFDVRKQQRTIK--KEKVVRLRYVCSKEGYRKETNDE---KSYSQPITRCGCNAHMTCYLQKNERYKIVSFEQNHNHDLV 161 9**********9986665..6779**********98777...999*********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.0E-17	78	161	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence Send to blast
MENSYISEDF SPKEDYDSIS VDTVSVSESV EKEDNIANNE NYVQTEEVVI LEANIESELK 60 DELCIGMEFS SDETAHTTYQ KYGGSHGFDV RKQQRTIKKE KVVRLRYVCS KEGYRKETND 120 EKSYSQPITR CGCNAHMTCY LQKNERYKIV SFEQNHNHDL VMTPMKHLLR GNRALSISQK 180 QHADDAEMSG ISAKANFSFA GILCRHALKV LDKKNVRRIP STYILTRWSK EAKTRRISYY 240 HPKTLNETEK QSIGRRYSHI CRTFREIASV AADHIELTLC ANEDAIQLLR KLEEKKKELV 300 KANAWMPQSS DVGLVEEEEE VEDKEVPNAR GIKRKASVGR PKNQKEYDKS YGGPS*

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence Send to blast

MENSYISEDF SPKEDYDSIS VDTVSVSESV EKEDNIANNE NYVQTEEVVI LEANIESELK  60
DELCIGMEFS SDETAHTTYQ KYGGSHGFDV RKQQRTIKKE KVVRLRYVCS KEGYRKETND  120
EKSYSQPITR CGCNAHMTCY LQKNERYKIV SFEQNHNHDL VMTPMKHLLR GNRALSISQK  180
QHADDAEMSG ISAKANFSFA GILCRHALKV LDKKNVRRIP STYILTRWSK EAKTRRISYY  240
HPKTLNETEK QSIGRRYSHI CRTFREIASV AADHIELTLC ANEDAIQLLR KLEEKKKELV  300
KANAWMPQSS DVGLVEEEEE VEDKEVPNAR GIKRKASVGR PKNQKEYDKS YGGPS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g015670.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010507064.1	1e-136	PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
TrEMBL	R0EZH3	6e-78	R0EZH3_9BRAS; Uncharacterized protein
STRING	XP_010507064.1	1e-135	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6200	6	13

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	5e-15	FAR1 family protein