PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g019740.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 645aa    MW: 72425.4 Da    PI: 7.0079
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g019740.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.6e-07262284123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y C++Cg+sF r+ +L +H+r+H
  Csa04g019740.1 262 YDCNICGESFVRSISLSNHQRVH 284
                     88*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.13689116IPR007087Zinc finger, C2H2
PfamPF139124.3E-889111IPR007087Zinc finger, C2H2
SuperFamilySSF576674.03E-1089111No hitNo description
SMARTSM003550.1889111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576674.03E-10257284No hitNo description
Gene3DG3DSA:3.30.160.605.4E-7262284IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0037262284IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.464262289IPR007087Zinc finger, C2H2
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
PROSITE profilePS501579.078622644IPR007087Zinc finger, C2H2
SMARTSM00355130622644IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MSLKEHEMEE AAMSLVMLSE RVCDFGLPLG DDDSMDLDKL IPIQEKSLGC VESIQDFRKM  60
VSHSGFEKST TCSDDVVALR SELRSSSSHR CNVCGKTFGC YQALGGHKRL HISIKKKLEC  120
KKENTKDDSS LFFGSSEDKT IVSIPSSFEV FQEEKILDCV ESRQDFSELL PLDYGHKGHR  180
SLLERKKEYT VGDNKSLSYL SEAKKTVSKP SSFEVYQEKV LHCVELKQDF SELLSYSSSC  240
SQTSFSTLRS ELQKDTQSKS SYDCNICGES FVRSISLSNH QRVHRPNREK LSRKRKYTKD  300
HNSLSDSLQV SQEKILHCVE SKQDFSELLS HPGFEKSVSC SIIPLSSSLR SKSQTSISTE  360
GQLARKNEKS EDVNSLFGVT ESEATKIFIQ PLSFEVSQAK ILHCVESKQD FSELFSHSGF  420
DNFRSTFPMT EIEKQEVTEA AVSLVMFSQR VYDFASIRNL PLGDNDVMDL ESKPCPLRSG  480
HQRLHRSIEG QLAHKREYTE DDNSLSNSVK AKKIVTQPSS FEVFQEEKNL QCAEPQLEFH  540
ELLAHSGFHK SSTCSMTRSS ALPSHPSSFG VSQEKILHCA ESKLDDFGEL VAHSGFVKSS  600
SCSKTKFTAL HSPLRSKSHS SYRFKICGKS FVCSQTLGGH QTLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g019740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019099629.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 107
TrEMBLA0A178VII51e-149A0A178VII5_ARATH; Uncharacterized protein
TrEMBLA0A178VKG41e-150A0A178VKG4_ARATH; Uncharacterized protein
STRINGXP_010430874.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-130C2H2 family protein