PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g026010.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 195aa MW: 21926.4 Da PI: 5.5162

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g026010.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	90.1	4.9e-28	8	153	5	102
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................. 65 +++ +++h kvggRdRR+Rl+ ++a ++F L++eLGf +d++t+ WLl++a+pai ++tg Csa04g026010.1 8 TRTPKDRHLKVGGRDRRIRLPPSIAPKLFSLTEELGFQSDGETVGWLLRNAEPAIFAATGHgvstttndvihssdkifhnyysncgnfsniingn 102 56789********************************************************7766555555544444444444444444444444 PP TCP 66 ssssaseceaesssssasnsssg...................................kaaksaakskksqk 102 + + + k++ + +sq+ Csa04g026010.1 103 C---------------------SytidgdnwtgintfhhemvfpettmkehaasstfpVKDKEDVSDMSSQT 153 0.....................04444444444444443333343322222222222222222222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.1E-24	11	142	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.013	11	65	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MDNMEKATRT PKDRHLKVGG RDRRIRLPPS IAPKLFSLTE ELGFQSDGET VGWLLRNAEP 60 AIFAATGHGV STTTNDVIHS SDKIFHNYYS NCGNFSNIIN GNCSYTIDGD NWTGINTFHH 120 EMVFPETTMK EHAASSTFPV KDKEDVSDMS SQTQPAMLPP LMHHQQQQEQ EPQPQFELGK 180 VEMAADEKRY VWSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g026010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010503166.1	1e-147	PREDICTED: transcription factor TCP16-like
Swissprot	Q9M1U4	1e-47	TCP16_ARATH; Transcription factor TCP16
TrEMBL	D7LNL8	2e-62	D7LNL8_ARALL; Uncharacterized protein
STRING	XP_010503166.1	1e-147	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	2e-50	TCP domain protein 16

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]