PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g026130.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 195aa MW: 21932 Da PI: 10.7535

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g026130.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.3	7.1e-07	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F+r nL+ H r H Csa04g026130.1 66 FICEICNKGFKRDQNLQLHRRGH 88 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.57E-5	64	89	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.7E-6	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.866	66	88	IPR007087	Zinc finger, C2H2
Pfam	PF12171	5.5E-6	66	88	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MIIIINSHFP AMSFTKNTSP QILTLTLILP PQTQPRGSEI YREIQAYPDA EVIALSPNSL 60 MATNRFICEI CNKGFKRDQN LQLHRRGHNL PWKLKQRTNK DQIKKKAAQM GSKRSSSSLN 120 NSKAFGLMRN TSIFNNKQTE NMKTTEVDEG GFTRDFLGVG SQHRTWPLLM VNRNLLDSSP 180 PATTDGTPTS DRNQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g026130.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF428302	1e-116	AF428302.1 Arabidopsis thaliana AT3g45260/F18N11_20 mRNA, complete cds.
GenBank	AJ621493	1e-116	AJ621493.1 Arabidopsis thaliana mRNA for ID1-like zinc finger protein 1 (idz1 gene).
GenBank	AY143936	1e-116	AY143936.1 Arabidopsis thaliana At3g45260/F18N11_20 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010425952.1	1e-52	PREDICTED: protein indeterminate-domain 9-like
Refseq	XP_010425953.1	1e-52	PREDICTED: protein indeterminate-domain 9-like
Swissprot	F4JYZ8	2e-45	IDD13_ARATH; Protein indeterminate-domain 13
TrEMBL	A0A178UIB8	6e-44	A0A178UIB8_ARATH; Uncharacterized protein
STRING	XP_010425952.1	5e-52	(Camelina sativa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60470.1	2e-37	C2H2 family protein

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]