PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g028800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 363aa    MW: 39561.5 Da    PI: 10.2431
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g028800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.0004285107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg  F+    L  H+r+H
  Csa04g028800.1  85 HPCPICGVNFPMGQALGGHMRRH 107
                     78********************9 PP
2zf-C2H211.90.00067275297123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + Cp+Cg  F+    L  H+r+H
  Csa04g028800.1 275 HICPICGLDFPMGQALGGHMRKH 297
                     68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.1E-113560IPR007087Zinc finger, C2H2
SMARTSM003551.13658IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.9543658IPR007087Zinc finger, C2H2
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
SMARTSM003550.2585107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.42985112IPR007087Zinc finger, C2H2
SuperFamilySSF576674.96E-785107No hitNo description
PfamPF139123.7E-1085108IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576674.96E-7219246No hitNo description
PfamPF139124.4E-11223248IPR007087Zinc finger, C2H2
SMARTSM003550.33224246IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.432224251IPR007087Zinc finger, C2H2
PROSITE patternPS000280226246IPR007087Zinc finger, C2H2
SuperFamilySSF576672.02E-5272302No hitNo description
SMARTSM003550.16275297IPR015880Zinc finger, C2H2-like
PfamPF139121.1E-9275298IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492275302IPR007087Zinc finger, C2H2
PROSITE patternPS000280277297IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MVARSEETEK MNDTAARCLM LLPRVGEYGG GEKRVFRCKT CLKEFSTFQA LGGHRASHKK  60
LINSEDPSLL GSLSNKKTKA AMTSHPCPIC GVNFPMGQAL GGHMRRHRNE KVSGTTLVTR  120
SFLPEATTVT TLKKCSSGKR VACLDLDLDS MDSLVNWKLE NKKQKNPRRA SLNSIQDFET  180
MVANTENLEP TMDKAAANCL MLLSRVGGGG GGEGTTALKE KRVFRCKTCK REFSSFQALG  240
GHRASHNKPT NNGDYTSIPG SPKKKKPTKT TTSIHICPIC GLDFPMGQAL GGHMRKHRNE  300
KEKASNNELV TRSFLPENAT LTTTTLKKSS SSGKRVACLD FADLAAVETL VTTNLELGRT  360
MY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g028800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503222.11e-114PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX859e-91ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A178V7P04e-82A0A178V7P0_ARATH; Uncharacterized protein
STRINGXP_010503222.11e-113(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-85C2H2 family protein