PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g028980.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 138aa    MW: 15781.5 Da    PI: 10.5149
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g028980.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind48.23e-1516103297
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     F  ++y++++d++++++isw ++ nsf++++  ef +k++p+  +   nf+ Fv +L   gFk+vk + +         eF +++F  ++ +ll+
  Csa04g028980.1  16 FYVRVYQVVDDPSTDSIISWGSK-NSFIIWNVGEFRRKIMPTCVEFGvNFSCFVSKLRSHGFKRVKGSGQ--------LEFGDEYFVVDQPQLLK 101
                     8899*****************99.9*****************8876449*****************9986........69999999999999988 PP

                     XX CS
    HSF_DNA-bind  96 ki 97 
                      +
  Csa04g028980.1 102 LM 103
                     65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.8E-1812106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.107.8E-1712100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.35E-1612103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.0E-1416103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-61639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-66779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MIHLVHNCFP RGLSSFYVRV YQVVDDPSTD SIISWGSKNS FIIWNVGEFR RKIMPTCVEF  60
GVNFSCFVSK LRSHGFKRVK GSGQLEFGDE YFVVDQPQLL KLMMVEALRT KRNAKKAKAK  120
AKKDRVQVEG LLKHLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g028980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010495279.12e-71PREDICTED: heat stress transcription factor A-5-like
TrEMBLR0GJE46e-54R0GJE4_9BRAS; Uncharacterized protein
STRINGXP_010507232.18e-78(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.14e-36Winged helix-turn-helix transcription repressor DNA-binding