PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g030540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 154aa    MW: 17039 Da    PI: 7.7121
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g030540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.21.2e-10119150132
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg 32 
                      +g+WT+eEd +lv +++ +G+g+W++++ + g
   Csa04g030540.1 119 KGPWTPEEDIILVSYIQDHGPGNWRSVPTHTG 150
                      79*************************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-12110148IPR009057Homeodomain-like
SuperFamilySSF466892.3E-9113150IPR009057Homeodomain-like
PROSITE profilePS5129415.28114153IPR017930Myb domain
PfamPF002499.8E-9119149IPR001005SANT/Myb domain
CDDcd001671.10E-6121150No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MTPILCIEGY QTLFDISSMI YLFPESSQAI VLCPETGRSR KLGIMTSSLW SGGYRSLPNL  60
LITSSLCSEL CQVQIKKVRK MVLPCISMKI IGIMTPAPWN GEETEMGRPP CCDKIGVKKG  120
PWTPEEDIIL VSYIQDHGPG NWRSVPTHTG IFF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g030540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1329557e-70AL132955.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F1P2.
GenBankCP0026867e-70CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_010495675.11e-31(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.18e-29myb domain protein 94