PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g030900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27266.4 Da    PI: 5.9063
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g030900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF23.95.3e-0822601350
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                    f +R  g  KKA ELSvLC+  v  + + + +++l+ ++
  Csa04g030900.1 22 FKQRFPGFKKKAIELSVLCGNSVGFVCYTPdDNNLHIWP 60
                    778889999**************9888876257888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500669.615250IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-11589IPR002100Transcription factor, MADS-box
CDDcd002661.12E-16790No hitNo description
PfamPF003195.3E-72156IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MAPRSKSYVD DDNDLKMKRK VFKQRFPGFK KKAIELSVLC GNSVGFVCYT PDDNNLHIWP  60
EPQEKPQALT QLLAKFNALS DHKRKNNACD RYDFPDIKGL SGEDLRRHVD NLDSHLVGIK  120
QRKLSILRRG NSKPKETETE EDRVSDRLGF GHVDFGGYHE TAMGSCAASE VYRDVGVSDS  180
SLLDPFTSGR DYFPTDNDFG VCANDGAWDH SWMDLKFSST LFPAGYDPLV GATDEYQTLV  240
TI*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g030900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470829.11e-142PREDICTED: agamous-like MADS-box protein AGL49
SwissprotQ9ZUI94e-47AGL49_ARATH; Agamous-like MADS-box protein AGL49
TrEMBLD7KXG13e-88D7KXG1_ARALL; Uncharacterized protein
STRINGXP_010470829.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.12e-49AGAMOUS-like 49
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]