PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g033880.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 178aa    MW: 20283.9 Da    PI: 7.2182
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g033880.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26078.31.3e-2416114199
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal.peeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +Ca+Ck+l+  C   Cv  p+fp+++  +f+ vh+ FGa nv ++l++  + e+re+a++sl+y Aear rd ++G++g+il++++ l+++k+++
  Csa04g033880.1  16 RCAVCKILNDPCDLTCVSKPHFPSHD-TRFEDVHQTFGAMNVRNILNNFdSLEQREIAVNSLCYAAEARRRDLISGVHGIILHYENILNNMKQDI 109
                     6**********************998.89********************66678****************************************9 PP

          DUF260  95 allke 99 
                     +++ +
  Csa04g033880.1 110 NYAVN 114
                     98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089119.20215116IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-2316111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGLREKRKQR RVAYNRCAVC KILNDPCDLT CVSKPHFPSH DTRFEDVHQT FGAMNVRNIL  60
NNFDSLEQRE IAVNSLCYAA EARRRDLISG VHGIILHYEN ILNNMKQDIN YAVNDIETNM  120
GHDQVPKYFD LPIPDDFFVT STSLNSYIEK IKNLNIRMRE DQKMGDGHGA HGASTSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-151711612111LOB family transfactor Ramosa2.1
5ly0_B1e-151711612111LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
139REKRKQR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g033880.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002869811.13e-74LOB domain-containing protein 32
SwissprotO496511e-61LBD32_ARATH; LOB domain-containing protein 32
TrEMBLD7ME157e-73D7ME15_ARALL; Uncharacterized protein
STRINGXP_010412638.18e-83(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G22700.15e-64LOB domain-containing protein 32