PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g034380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 159aa    MW: 17663.7 Da    PI: 5.2888
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g034380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF46.74.1e-151250139
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevavii 39
                    k+ie k  r vtfskRr+g++ KA+EL+ L  a++a+i 
  Csa04g034380.1 12 KKIEGKEPRAVTFSKRRKGLFSKASELCLLSSAQIAIIT 50
                    68999********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.4E-12167IPR002100Transcription factor, MADS-box
PROSITE profilePS5006614.409449IPR002100Transcription factor, MADS-box
CDDcd002663.26E-19584No hitNo description
PRINTSPR004043.9E-6626IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-161179IPR002100Transcription factor, MADS-box
PfamPF003191.5E-141364IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-62641IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MGGLKRKIDT EKKIEGKEPR AVTFSKRRKG LFSKASELCL LSSAQIAIIT TPVSANSHNS  60
FYSFGHSSVD SIVAAFLADE TPTPTRDVDD ENLGFWWEDE SLANSENAEE LAEGIDSMKR  120
MLHDLKEELE FHHRIYSSSS NIIHILIESG SLINGREH*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g034380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507330.11e-113PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6335e-53AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0HI754e-56R0HI75_9BRAS; Uncharacterized protein
STRINGXP_010507330.11e-112(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46408.13e-47AGAMOUS-like 97
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]