PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g036630.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 259aa    MW: 29517.9 Da    PI: 10.3855
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g036630.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer925.5e-2964117458
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++Y+eC+kNhAas+Ggh++DGC+Ef++  geegt  alkCaAC+CHR+FHR+ev 
  Csa04g036630.1  64 AKYRECQKNHAASTGGHVIDGCCEFLAG-GEEGTLGALKCAACNCHRSFHRKEVY 117
                     68*************************8.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.4E-2765116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1665116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.1E-2565116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.5266115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.608.7E-26183250IPR009057Homeodomain-like
SuperFamilySSF466893.31E-17184250IPR009057Homeodomain-like
PROSITE profilePS500718.827187251IPR001356Homeobox domain
TIGRFAMsTIGR015651.8E-25189246IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEFGGKGNAI TSTTMISTNT LEVKARTKTF PDPQTKPESA DPSIALFPIK KETQKPRTRA  60
DQPAKYRECQ KNHAASTGGH VIDGCCEFLA GGEEGTLGAL KCAACNCHRS FHRKEVYGHK  120
QDQMMITPAF YSSNSSYKAM QPRVMHPTGE IGRRTSSSSE DMKKILSHRN QNVDGRCLMM  180
MMTTTRKKKK RVRTKINEEQ KEKMKEFAER LGWRMQKKDE DEIDKFCKVV NLRRQVFKVW  240
MHNNKQAMKR NSNTTSEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181902471875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g036630.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1756491e-179AK175649.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-13-N07.
GenBankAL0498621e-179AL049862.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F18B3.
GenBankAY0860201e-179AY086020.1 Arabidopsis thaliana clone 20695 mRNA, complete sequence.
GenBankCP0026861e-179CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010503763.10.0PREDICTED: zinc-finger homeodomain protein 7-like
SwissprotQ9SVL01e-144ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A178VL561e-142A0A178VL56_ARATH; ZHD7
STRINGXP_010503763.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-133homeobox protein 28