PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g037770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 193aa    MW: 21650 Da    PI: 6.2241
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g037770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.31.1e-1058104450
                     XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                     + + +r   NReA r++R++Kka+++ Le++vk Le+ N+ L  +l+
  Csa04g037770.1  58 SNNKKRSCGNREAVRKYREKKKARTAYLEDEVKRLETLNEHLLRKLQ 104
                     567899999*********************************98887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.7E-1151123No hitNo description
SMARTSM003382.8E-754122IPR004827Basic-leucine zipper domain
PfamPF077167.0E-1555105IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.10557123IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.25E-759105No hitNo description
CDDcd146862.15E-1067105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042538Biological Processhyperosmotic salinity response
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MNMDEEEVEV WGGASRGCSH THSCNPPGPD DASHSHTCFH THTHLIIPDQ QENDHSDSNN  60
KKRSCGNREA VRKYREKKKA RTAYLEDEVK RLETLNEHLL RKLQSQAIVE AELIRLRTLL  120
VEMQEKIDGE LGGFSNQKQN KQCTGFVFKE DGCSVATTNI LCEAARVECE DGQTLHDAAI  180
HSFVPHSPPF SN*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g037770.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100279.11e-143PREDICTED: basic leucine zipper 24-like
RefseqXP_019100280.11e-143PREDICTED: basic leucine zipper 24-like
RefseqXP_019100281.11e-143PREDICTED: basic leucine zipper 24-like
RefseqXP_019100282.11e-143PREDICTED: basic leucine zipper 24-like
RefseqXP_019100283.11e-143PREDICTED: basic leucine zipper 24-like
RefseqXP_019100284.11e-143PREDICTED: basic leucine zipper 24-like
RefseqXP_019100285.11e-143PREDICTED: basic leucine zipper 24-like
SwissprotQ8GTS11e-99BZP24_ARATH; Basic leucine zipper 24
TrEMBLA0A078GEX71e-108A0A078GEX7_BRANA; BnaA04g05810D protein
TrEMBLA0A397ZQS51e-108A0A397ZQS5_BRACM; Uncharacterized protein
STRINGXP_010426784.11e-137(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM151721518
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.15e-90basic leucine zipper 24