PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g042820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 218aa    MW: 25341 Da    PI: 9.4796
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g042820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.63.4e-25129184254
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYeg 54 
                     dD y+WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r +edp ++ +tY++
  Csa04g042820.1 129 DDNYTWRKYGQKEILGSTFPRAYYRCTHKklyKCPAKKQVQRLDEDPYTFRVTYRS 184
                     8***************************99999*********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.1E-24124184IPR003657WRKY domain
SuperFamilySSF1182903.01E-22127184IPR003657WRKY domain
SMARTSM007741.3E-27128189IPR003657WRKY domain
PfamPF031061.0E-21129183IPR003657WRKY domain
PROSITE profilePS5081119.198129182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MEEIMRMIFN GINLVKELEF SLSSQEPPES DLSNSLGSIS TLFGDANERL TILLAWRNAL  60
RQQEPVRMMD MTMQTGPDLT QDYWLRCPVM RTVECIDTSR PRHRKRKKDT GGEETVLVAA  120
VGRMEIPPDD NYTWRKYGQK EILGSTFPRA YYRCTHKKLY KCPAKKQVQR LDEDPYTFRV  180
TYRSYTRATS STISRSHQHM PPQQLPTYPP SLTWPKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-17129182962OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103107RKRKK
2103108RKRKKD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g042820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504543.11e-163PREDICTED: WRKY transcription factor 55
SwissprotQ9SHB54e-61WRK55_ARATH; WRKY transcription factor 55
TrEMBLR0HL291e-108R0HL29_9BRAS; Uncharacterized protein
STRINGXP_010504543.11e-162(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-59WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]