PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g043960.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 310aa MW: 34941.9 Da PI: 8.3566

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g043960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.2	7.4e-07	281	303	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L +Hi + H Csa04g043960.1 281 VCPKCSKGFRDPKDLLKHIDKdH 303 7******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51039	8.732	58	126	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.4E-10	63	118	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	1.07E-11	66	124	No hit	No description
Pfam	PF01428	1.5E-13	80	116	IPR000058	Zinc finger, AN1-type
SMART	SM00154	1.6E-5	80	119	IPR000058	Zinc finger, AN1-type
Gene3D	G3DSA:4.10.1110.10	1.6E-8	158	214	IPR000058	Zinc finger, AN1-type
SuperFamily	SSF118310	1.7E-7	160	212	No hit	No description
PROSITE profile	PS51039	7.797	165	212	IPR000058	Zinc finger, AN1-type
Pfam	PF01428	4.4E-6	168	208	IPR000058	Zinc finger, AN1-type
SMART	SM00154	0.044	168	209	IPR000058	Zinc finger, AN1-type
PROSITE profile	PS50157	9.203	280	308	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	282	303	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
ERINVDFLRF FQISSSSSSR FCEFSVHLNS RNLGIFLFFF LPPVCLSPVL DFCGNYLFLI 60 CVFCQKKMGT PEFPDLGKHC SVDYCKQIDF LPFTCDRCLQ VFCLDHRSYM KHDCPKGNRG 120 DVTVVICPLC AKGVRLNPDE DPNITWEKHV NTDCDPSNYE KTVKKKKCPV PRCRELLTFS 180 NTIKCRDCCI DHCLKHRFGP DHTCSGPKKT ESSFSFMGFL STNSKEAPPT SSSSSSWSSL 240 FSRLGNDISQ TFQFASGGDG SSEKTHERNG KQNRGKVTVD VCPKCSKGFR DPKDLLKHID 300 KDHRGTSKA*

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in environmental stress response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g043960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK119096	0.0	AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010504676.1	1e-178	PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13-like
Swissprot	Q9SCM4	1e-157	SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBL	R0FR49	1e-151	R0FR49_9BRAS; Uncharacterized protein
STRING	XP_010504676.1	1e-177	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3908	27	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57480.1	1e-156	C2H2 family protein

Publications ? help Back to Top
Dixit A, et al. A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses. Plant Cell Environ., 2018. 41(5): p. 1171-1185 [PMID:29194659]