PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g044470.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 465aa MW: 51073.6 Da PI: 6.5748

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g044470.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.5	9.5e-11	2	48	8	48
HHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 E++ll++av+++G+++W+++a++++ ++t+ +c++++ +++ Csa04g044470.1 2 EELLLACAVHRHGTDSWDSVAAEIQkqnsifRTLTAFDCRHKYCDLK 48 9******************************************8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.516	1	52	IPR017930	Myb domain
CDD	cd00167	2.81E-4	2	48	No hit	No description
Pfam	PF00249	7.5E-11	2	48	IPR001005	SANT/Myb domain

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence Send to blast
MEELLLACAV HRHGTDSWDS VAAEIQKQNS IFRTLTAFDC RHKYCDLKRR FSCELVSPGS 60 TEGEETVDAA EISSVPWLEE LRKLRVDELR REVERYDLSI SSLQLKVKRL EDEREESLKI 120 EDSDLDKIAE TKENHRDSGN TSGAVPVDEP VNSPDPKDNN TGTGSDNTNI DVKIAEPVDE 180 EPNRIDNDEK PVREDSGRGS CESAANSDRE DTVREGNDLP EFIESMEESK GEEETKETMP 240 MIACRKRSSL AVRTSASVTE PSKKKTKVAS TVDEKPVSEE EEDETSDKDE EPIVSKKMTR 300 ARAPSTAKKV GSRNVKTSLN AGLPSKGRSS NDSSEPKKIV QEKKGNNTSG GSKKQSAASF 360 LKRMKGVSSS ENVVETVKAD SANGKRGAEQ RKSISKNEKV DAAKLSAGQK RLIGKKPTIE 420 KGSPAKKTTG VASKRSSPLI AKRDSETSEM ETGSSTRPKK RSRR*

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence Send to blast

MEELLLACAV HRHGTDSWDS VAAEIQKQNS IFRTLTAFDC RHKYCDLKRR FSCELVSPGS  60
TEGEETVDAA EISSVPWLEE LRKLRVDELR REVERYDLSI SSLQLKVKRL EDEREESLKI  120
EDSDLDKIAE TKENHRDSGN TSGAVPVDEP VNSPDPKDNN TGTGSDNTNI DVKIAEPVDE  180
EPNRIDNDEK PVREDSGRGS CESAANSDRE DTVREGNDLP EFIESMEESK GEEETKETMP  240
MIACRKRSSL AVRTSASVTE PSKKKTKVAS TVDEKPVSEE EEDETSDKDE EPIVSKKMTR  300
ARAPSTAKKV GSRNVKTSLN AGLPSKGRSS NDSSEPKKIV QEKKGNNTSG GSKKQSAASF  360
LKRMKGVSSS ENVVETVKAD SANGKRGAEQ RKSISKNEKV DAAKLSAGQK RLIGKKPTIE  420
KGSPAKKTTG VASKRSSPLI AKRDSETSEM ETGSSTRPKK RSRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g044470.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL132977	0.0	AL132977.1 Arabidopsis thaliana DNA chromosome 3, BAC clone T10K17.
GenBank	CP002686	0.0	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010507502.2	0.0	PREDICTED: neurofilament medium polypeptide-like, partial
TrEMBL	D7LVY6	1e-127	D7LVY6_ARALL; Predicted protein
STRING	XP_010507502.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6530	25	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	4e-89	DNA-binding bromodomain-containing protein