PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g046330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 107aa    MW: 11553.2 Da    PI: 8.3428
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g046330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like23.81e-0784104222
         G2-like   2 prlrWtpeLHerFveaveqLG 22 
                      rlrWtpe He+Fv+ v +LG
  Csa04g046330.1  84 LRLRWTPEVHESFVKSVIKLG 104
                     69******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-581104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 107 aa     Download sequence    Send to blast
MENTCDFNYG HYQLTNSSRL DKGIGESEIE SSRLVKLVKI CEMLLASSNP VTRLSPCQSC  60
VAGAVPIDVV SSHPSPGSAA NHKLRLRWTP EVHESFVKSV IKLGKA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g046330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0266453e-53AB026645.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MGH6.
GenBankAY0508893e-53AY050889.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankAY0847383e-53AY084738.1 Arabidopsis thaliana clone 116381 mRNA, complete sequence.
GenBankAY0966743e-53AY096674.1 Arabidopsis thaliana unknown protein (At3g13040) mRNA, complete cds.
GenBankCP0026863e-53CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010499814.14e-30PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010499823.14e-30PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010499830.14e-30PREDICTED: myb family transcription factor PHL6-like
RefseqXP_010499839.14e-30PREDICTED: myb family transcription factor PHL6-like
RefseqXP_019101525.14e-30PREDICTED: myb family transcription factor PHL6-like
SwissprotQ949U22e-26PHL6_ARATH; Myb family transcription factor PHL6
TrEMBLD7L0M92e-27D7L0M9_ARALL; Uncharacterized protein
STRINGXP_010499814.11e-29(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13040.28e-29G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]