PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa04g047100.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 258aa MW: 29603.7 Da PI: 5.3894

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa04g047100.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	21.5	4.3e-07	123	167	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ r RR+ri ++ +eL +l+P +K + ae+ + A +Y+k Lq Csa04g047100.1 123 SIAARERRRRIADKTHELGKLIPGG-----QKQNTAEMFQSAAKYVKFLQ 167 577899***************96.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.53E-10	115	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.303	117	166	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-9	120	173	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-5	123	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.2E-8	123	172	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MSMDCLSHFF NYDPPVQLQD CFLPDMDMII PESDSFFLES QPQLQFHQPL FQEEAPSQTY 60 FDPFCDQFLS PQEISLPNPK TEIFNETHDL DSFLPTPKRQ KLVNSSYHCR GDDTKKPTLS 120 SQSIAARERR RRIADKTHEL GKLIPGGQKQ NTAEMFQSAA KYVKFLQSQV GILQLMQTTK 180 KCFLTSWVNL LTQGSSNVQS ETQVLLESQA IQEKLSTEEV CLVPCEMVQD LTTQETIRRN 240 PKIYREINKL LSRDLAK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa04g047100.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004238	1e-125	AC004238.3 Arabidopsis thaliana chromosome 2 clone F19I3 map ve016, complete sequence.
GenBank	AY234412	1e-125	AY234412.1 Arabidopsis thaliana hypothetical protein (At2g34820) mRNA, complete cds.
GenBank	CP002685	1e-125	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010516643.1	1e-148	PREDICTED: transcription factor bHLH53-like
Swissprot	Q84RD0	1e-135	BH053_ARATH; Transcription factor bHLH53
TrEMBL	D7LH48	1e-133	D7LH48_ARALL; Predicted protein
STRING	XP_010516643.1	1e-147	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4547	25	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34820.1	1e-124	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]