PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g047110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 392aa    MW: 42482.5 Da    PI: 5.2313
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g047110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986e-31181239259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Csa04g047110.1 181 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 239
                     699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-31174241IPR003657WRKY domain
PROSITE profilePS5081133.109175241IPR003657WRKY domain
SuperFamilySSF1182902.35E-26178241IPR003657WRKY domain
SMARTSM007741.4E-37180240IPR003657WRKY domain
PfamPF031067.8E-26182239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MSRPPTSDLH VEFPTAAASA SCLTNPFGDP FVSMTDPLLH LAANSGFLSG AGDNESNNSF  60
AVLPKGFEDD QITSQCSVFP RIRISQSNII QDASTCNSPA IAVSNAPTSP WGMISVDATN  120
SPRNCLLVDN SNNMSSASQI QISSSPQNIG IKRRKSQTKK VVCIPAPAAM NSRSSGEVVP  180
SDLWAWRKYG QKPIKGSPYP RGYYRCSSSK GCSARKQVER SRTDPNMLVI TYTSEHNHPW  240
PTQRNALAGS TRSSSSSSSN LSSKFSTATA TTSPSSRFSQ NNNNKDEHNK SHLPSSSTPP  300
YAAAGVKEEK GEERHDNMEF DNDVEDTYRP ELLPEFQHQP EDFFADLDEL EGDSLNMLLS  360
HSSGGGNMDN TSTIPDVFSD FFDDDDSSRS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-25155242280Disease resistance protein RRS1
5w3x_D2e-25155242280Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g047110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4048630.0AF404863.1 Arabidopsis thaliana WRKY transcription factor 35 (WRKY35) mRNA, complete cds.
GenBankBT0292390.0BT029239.1 Arabidopsis thaliana At2g34830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010504968.10.0PREDICTED: probable WRKY transcription factor 35
SwissprotO647470.0WRK35_ARATH; Probable WRKY transcription factor 35
TrEMBLA0A384KE500.0A0A384KE50_ARATH; WRKY35
TrEMBLQ058H90.0Q058H9_ARATH; At2g34830
STRINGXP_010504968.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30852865
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.10.0WRKY DNA-binding protein 35
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]